Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_H06
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74476-5|CAA98965.1|  325|Caenorhabditis elegans Hypothetical pr...    29   1.4  
L11247-7|AAA28003.3|   91|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AY255665-1|AAQ96602.1|   91|Caenorhabditis elegans MiRP2 protein.      28   4.3  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AY255667-1|AAQ96604.1|  159|Caenorhabditis elegans MiRP4 protein.      27   5.7  
AF099925-6|AAC69501.1|  159|Caenorhabditis elegans Mirp k channe...    27   5.7  
Z81062-6|CAB02949.2|  320|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacti...    27   10.0 

>Z74476-5|CAA98965.1|  325|Caenorhabditis elegans Hypothetical
           protein W05B10.5 protein.
          Length = 325

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -3

Query: 235 ILLHHKAALSTFYFIIALCLIISPADNKHVFIIQCCMFSKGTSILRFYITIKPI 74
           ILL   +   T + II L  II   + K  F+  CC+ S G SI+     I P+
Sbjct: 23  ILLTVTSITGTIFNIIVLFAIIFRVNKKDGFLKICCLKSFGNSIVCIGYLIWPV 76


>L11247-7|AAA28003.3|   91|Caenorhabditis elegans Hypothetical
           protein F09G8.9 protein.
          Length = 91

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +1

Query: 34  TSCNAVCFPSRHIISVLLLCKTVILMCL 117
           +SCN + +P+++   +L++  T + +CL
Sbjct: 30  SSCNRISYPTKYFDFLLVIIMTFVFLCL 57


>AY255665-1|AAQ96602.1|   91|Caenorhabditis elegans MiRP2 protein.
          Length = 91

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +1

Query: 34  TSCNAVCFPSRHIISVLLLCKTVILMCL 117
           +SCN + +P+++   +L++  T + +CL
Sbjct: 30  SSCNRISYPTKYFDFLLVIIMTFVFLCL 57


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = -3

Query: 235  ILLHHKAALSTFYFIIALCLIISPADNKHVFIIQCCMFSKGTSILRFYITIKPILCAEK 59
            I++ H  + S F ++    +    + N++VFII CC F  GTS   +  T++  L +EK
Sbjct: 4901 IIVFHPISNSIFEYLKLAKVWSLISRNQNVFIIICC-FENGTSHTEWTGTLRS-LASEK 4957


>AY255667-1|AAQ96604.1|  159|Caenorhabditis elegans MiRP4 protein.
          Length = 159

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = -3

Query: 265 FQKENFAYKTILLHHKAALSTFYFIIALCLII--SPADNKHVFIIQC-CMFSKGTSILRF 95
           F K +   K +LL   +  S  +  +   L++  S ADN  +   Q  C+   G   L  
Sbjct: 20  FDKMSETKKNVLLSLHSLSSLIHVAMFYFLLVQWSKADNPVLTHFQIFCLVIIGIGFLII 79

Query: 94  YITIKPILCAEKENIQHCRKFF 29
            I I  I  +E ++  H R+FF
Sbjct: 80  LILIFSIFKSEMKSDSHARRFF 101


>AF099925-6|AAC69501.1|  159|Caenorhabditis elegans Mirp k channel
           accessory subunitprotein 2, isoform a protein.
          Length = 159

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = -3

Query: 265 FQKENFAYKTILLHHKAALSTFYFIIALCLII--SPADNKHVFIIQC-CMFSKGTSILRF 95
           F K +   K +LL   +  S  +  +   L++  S ADN  +   Q  C+   G   L  
Sbjct: 20  FDKMSETKKNVLLSLHSLSSLIHVAMFYFLLVQWSKADNPVLTHFQIFCLVIIGIGFLII 79

Query: 94  YITIKPILCAEKENIQHCRKFF 29
            I I  I  +E ++  H R+FF
Sbjct: 80  LILIFSIFKSEMKSDSHARRFF 101


>Z81062-6|CAB02949.2|  320|Caenorhabditis elegans Hypothetical
           protein F15A4.7 protein.
          Length = 320

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 277 FFLLFQKENFAYKTILLHHKAALSTFYFIIALCLIIS 167
           FF+LF+ + FA  T+LL+       F +I  LC  +S
Sbjct: 61  FFVLFRADLFASTTLLLYDIFFGRIFMYIPQLCPFVS 97


>AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacting
           protein (scaffoldprotein) protein 1 protein.
          Length = 998

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = +3

Query: 27  RKNFLQCCMFSF--SAHNIGF 83
           RKNF QC MF F  S  NI F
Sbjct: 913 RKNFFQCPMFDFFYSLQNISF 933


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,182,958
Number of Sequences: 27780
Number of extensions: 202551
Number of successful extensions: 503
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)