Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_H05
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0424 - 5601690-5601915,5602099-5602187,5603298-5603378,560... 267 8e-72
02_03_0080 + 14935664-14935796,14943858-14944175,14944352-149451... 29 3.3
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 29 3.3
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311... 29 4.4
06_01_0271 + 2009125-2009424,2009534-2009707,2010268-2010423 29 5.8
02_04_0005 - 18843061-18843201,18843309-18843440,18844457-188453... 29 5.8
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015... 28 7.7
>04_01_0424 -
5601690-5601915,5602099-5602187,5603298-5603378,
5604875-5605240
Length = 253
Score = 267 bits (654), Expect = 8e-72
Identities = 134/238 (56%), Positives = 168/238 (70%)
Frame = +3
Query: 99 RVLVGVKRVIDYAVKIRVKPDKSGVVTDGVKHSMNPFDEIAVEEAVRMKEKKLASEVIAV 278
++LV VKRV+DYAVK+RV+PD++GV T VK SMNPF EIAVEEA+R++E A+EV+A
Sbjct: 2 KILVAVKRVVDYAVKVRVRPDRTGVETASVKMSMNPFCEIAVEEALRLRESGAATEVVAA 61
Query: 279 SCGPSQAQETLRTALAMGADRAIHVEVAGAEYDTLQPIHVAKILAKLSQDEKADLVIVGK 458
+ GPSQ+ +TLRTALAMGADRA+HV L P+ VAKIL L+ E LVI+GK
Sbjct: 62 TVGPSQSADTLRTALAMGADRAVHVLHDPDPSRPLLPLAVAKILRALALQENPGLVILGK 121
Query: 459 QAIDDDSNQTAQMTAALLDWPQGTFASKIEKTDGALTITREIDGGLEVIKTKIPAVLSAD 638
QAIDDD NQT QM A LL+WPQGTFASK+ T+ RE+DGG+E I +PAV++ D
Sbjct: 122 QAIDDDCNQTGQMLAGLLNWPQGTFASKVILNKEKATVEREVDGGIETISLDLPAVITTD 181
Query: 639 LRLNEPRYATLPNIMXXXXXXXXXXXXXDLGVDLAPRIKVVSVEDPPXRQAGSIIPDV 812
LRLN+PRYATLPNIM DL VD+ ++VV V +PP R+AG I+ V
Sbjct: 182 LRLNQPRYATLPNIMKAKSKVIKKVTPEDLDVDIRSDMEVVEVTEPPKRKAGVILSSV 239
>02_03_0080 +
14935664-14935796,14943858-14944175,14944352-14945199,
14945249-14945521
Length = 523
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 411 AKLSQDEKADLVIVGKQAIDDDSNQTAQMTAAL--LDWPQGTFASKIEKTDG 560
A+L + + +G D+D + A T+ L +DWP G + IEK DG
Sbjct: 29 ARLRSGNGEEAMQLGGDRYDNDVDGVAAFTSKLRRVDWPAGFKPTGIEKYDG 80
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 140 KNPCEARQVWCSHRWGEALNES 205
K PC A +WC +W E ES
Sbjct: 158 KKPCPAYVLWCKDQWNEIKKES 179
>02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,
3110157-3111444
Length = 1821
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 471 DDSNQTAQMTAALLDWPQGTFASKIEKTDGALTITREIDGGLEVIKTKIPAVL 629
DD+N ++LD Q F+ KI K+ G L +E+ G + ++P+ L
Sbjct: 1373 DDANIIKLSKLSILDLEQNMFSGKIPKSIGQLKRLKELRLGENKLYGELPSTL 1425
>06_01_0271 + 2009125-2009424,2009534-2009707,2010268-2010423
Length = 209
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/79 (22%), Positives = 34/79 (43%)
Frame = +3
Query: 216 IAVEEAVRMKEKKLASEVIAVSCGPSQAQETLRTALAMGADRAIHVEVAGAEYDTLQPIH 395
+A E VRM K++ E+ + Q + A+GAD+ + A+ + +
Sbjct: 41 MAKERRVRMVAKQIQRELADMLTRDPVLQRAVLPEAALGADQYLSSLTTIADVELSNDLQ 100
Query: 396 VAKILAKLSQDEKADLVIV 452
V K+ + DE+ V +
Sbjct: 101 VCKVYVSVFGDERGKKVAI 119
>02_04_0005 -
18843061-18843201,18843309-18843440,18844457-18845315,
18845884-18845973,18846748-18846869,18846950-18847049,
18847151-18847205,18847275-18847365,18847453-18847572,
18847681-18847780,18847890-18848018,18848099-18848201,
18848670-18848743,18848848-18848933,18849297-18849358,
18849454-18849541,18849937-18850029
Length = 814
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 592 PPSISRVIVRAPSVFSIFDANVPCGQSNKAAVI 494
PP++ ++ ++ D ++P G NKAAV+
Sbjct: 702 PPTVREPVINRSGMYPKVDLDIPIGIHNKAAVV 734
>10_08_0521 +
18500105-18500529,18501216-18501284,18501467-18501555,
18501726-18501838,18502023-18502124,18502576-18502663,
18502795-18503361,18503766-18504149,18504168-18504384,
18504466-18504548,18505174-18505256,18505796-18506032,
18506481-18506658,18506814-18507328,18507740-18507916,
18508385-18508768,18508885-18509031
Length = 1285
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -2
Query: 628 STAGIFVLITSKPPSISRVIVRAPSVFSIFDANVPCGQSNKAAVICA 488
S A +F + +PPS R +R P + F A CG+ N A+ CA
Sbjct: 112 SPATVFRIRLKQPPSSLRHKMRVPELCRNFSAVAWCGKLN--AIACA 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,646,965
Number of Sequences: 37544
Number of extensions: 443468
Number of successful extensions: 1322
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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