Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_H04
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0655 - 19621717-19622594,19623186-19623227,19624323-196244... 37 0.012
01_07_0269 - 42414345-42415328,42415419-42415551,42415939-424160... 33 0.26
01_01_0754 - 5823076-5823089,5823797-5823911,5823992-5824045,582... 31 0.60
05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118 31 0.80
03_06_0415 - 33775143-33775305,33775438-33775565,33775654-337757... 31 0.80
10_04_0002 - 7372425-7372601,7372697-7372780,7372859-7373010,737... 30 1.8
06_01_0461 - 3280874-3281757,3281777-3282343,3282398-3283249,328... 30 1.8
01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251 30 1.8
01_01_0147 - 1332752-1333447,1333557-1333739 29 2.4
09_03_0034 + 11751965-11752010,11752138-11752205,11753142-117532... 29 3.2
02_02_0521 - 11156594-11156956,11157097-11157483,11158327-111583... 29 3.2
01_06_1225 - 35512211-35512240,35512762-35512850,35514162-355143... 29 3.2
03_06_0063 - 31391870-31392679 29 4.2
08_01_0207 - 1647168-1647251,1647583-1647726,1648176-1648287,164... 28 5.6
11_06_0013 - 19252779-19252805,19252947-19253090,19253572-192536... 28 7.4
11_03_0072 + 9605273-9606814,9616982-9617016,9617271-9617348,961... 28 7.4
04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522... 27 9.8
>10_08_0655 -
19621717-19622594,19623186-19623227,19624323-19624479,
19625333-19625405,19625483-19625595
Length = 420
Score = 37.1 bits (82), Expect = 0.012
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 155 SDSKYTNCPIKFQPTHSEMNCGTCRSD-PKYKCPTCMVPYCSVACYKLH 298
S S + F + + C C+ +Y CP C YCS+ CYK H
Sbjct: 16 SSSSSSAAAASFSLAETRVICRVCQKQFAQYTCPRCNARYCSLPCYKGH 64
>01_07_0269 -
42414345-42415328,42415419-42415551,42415939-42416007,
42416459-42416672,42416785-42417040
Length = 551
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 215 CGTCRSDP-KYKCPTCMVPYCSVACYKLHKQ 304
C C P KY+CP C CS+ C + HK+
Sbjct: 29 CEECGEQPWKYRCPGCSRLTCSLPCVQSHKR 59
>01_01_0754 -
5823076-5823089,5823797-5823911,5823992-5824045,
5825629-5827251
Length = 601
Score = 31.5 bits (68), Expect = 0.60
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Frame = +2
Query: 305 NPCIKPPSPPKQTIGVKQAVENLYPTEDTVPLD--RLNLLENSTEV---KKCLENPHVRE 469
+P PP P +Q +Q + ++P ++PL+ + ++NST V K + + R
Sbjct: 198 HPAAAPPPPEQQQQQQQQHADLIFPISRSLPLNDGQWFAIQNSTNVQSKKLVIPSNTYRA 257
Query: 470 ILELLDSSANPDELVQEYMQEPIFTEFVDA 559
+LE+ S + DE YM P E+++A
Sbjct: 258 VLEVFVSFHSNDE--DWYMHPP--NEYIEA 283
>05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118
Length = 361
Score = 31.1 bits (67), Expect = 0.80
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Frame = +2
Query: 176 CPI----KFQPTHSEMN----CGTCRSDPKYKCPTCMVPYCSVACYKLHKQNPCIKPP 325
CP+ F P H N C TC++ +CPTC + C L K ++ P
Sbjct: 100 CPVCTNSMFPPIHQCQNGHTLCSTCKARVHNRCPTCRQELGDIRCLALEKVAESLELP 157
>03_06_0415 -
33775143-33775305,33775438-33775565,33775654-33775761,
33775809-33775909,33776265-33776805,33777290-33777847
Length = 532
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 161 SKYTNCPIKFQPTHSEMNCGTCRSDPKYKCPTCMVPYCSVACYK 292
S + + PI + P + +C + KY+ +P CS+ CYK
Sbjct: 471 SIFDSKPISYPPPREKCAGPSCTNPYKYRDSKTKLPLCSLQCYK 514
>10_04_0002 -
7372425-7372601,7372697-7372780,7372859-7373010,
7373229-7373324,7373406-7373554,7373723-7373788,
7373925-7373994,7374106-7374236,7376464-7376471,
7377946-7378002
Length = 329
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 251 PTCMVPYCSVACYKLHKQNPCIKPPSPPKQTIGVKQAVENLYPTEDTVP 397
P C+V S+ C +N CI PS PK+T A E + D P
Sbjct: 102 PNCLVIEDSLCCSWKSCRNACIAVPSVPKRTAEFSSADEVINSLLDVRP 150
>06_01_0461 -
3280874-3281757,3281777-3282343,3282398-3283249,
3284503-3284644
Length = 814
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -3
Query: 459 WGFSRHFLTSVEFSN--KLSLSNGTVSSVGYKFSTA-CFTPIVCFGG 328
WG+ + SV FSN + L+N + GY+ T C+ F G
Sbjct: 382 WGYDMDYAESVPFSNCRNMCLANAKCQAFGYRRRTGLCYPKYTLFNG 428
>01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251
Length = 347
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Frame = +2
Query: 176 CPI----KFQPTHSEMN----CGTCRSDPKYKCPTCMVPYCSVACYKLHKQNPCIKPP 325
CP+ + P H N C TC++ +CPTC + C L K ++ P
Sbjct: 86 CPVCTNSMYPPIHQCQNGHTLCSTCKARVHNRCPTCRQELGDIRCLALEKVAESLELP 143
>01_01_0147 - 1332752-1333447,1333557-1333739
Length = 292
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +2
Query: 215 CGTCRSDPKYKCPTCMVPYCSVACYKLHKQNPCIKPP 325
CG+C + CP C+ P ++ C L K + P
Sbjct: 69 CGSCYAKMNTMCPCCIEPIGNIRCRPLEKVLAAMSAP 105
>09_03_0034 +
11751965-11752010,11752138-11752205,11753142-11753252,
11753626-11753712,11753800-11754008,11754653-11754926,
11756595-11757079,11758367-11758484,11758584-11758700,
11758779-11758925,11759061-11759135,11759198-11759266,
11759914-11760024,11760183-11760267,11760404-11760501,
11760628-11760720,11760806-11760880
Length = 755
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +2
Query: 239 KYKCPTCMVPYCSVACYKLHKQNP---CIKPPSPP 334
+Y TC+ P +AC K+ QN CI+PP P
Sbjct: 562 RYITDTCIDPVELLACLKVEGQNAYQFCIQPPDAP 596
>02_02_0521 -
11156594-11156956,11157097-11157483,11158327-11158383,
11159671-11159970
Length = 368
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +2
Query: 215 CGTCRSDPKYKCPTCMVPYCSVACYKLHKQNPCIKPP 325
C TC++ +CPTC + C L K ++ P
Sbjct: 127 CSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELP 163
>01_06_1225 -
35512211-35512240,35512762-35512850,35514162-35514312,
35514946-35515011,35515517-35515583,35516517-35516590
Length = 158
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +2
Query: 212 NCGTCRSDP-KYKCPTCMVPYCSVACYKL 295
+C C+ P KYKC C PY ++ L
Sbjct: 5 SCDVCKEAPSKYKCSACRTPYWALQTVSL 33
>03_06_0063 - 31391870-31392679
Length = 269
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 239 KYKCPTCMVPYCSVACYKLHKQNPCIKPPSPPKQTIGVKQAVENLYPT-EDTVP 397
++KC C + S HK + +K P+PP + V L P+ ED P
Sbjct: 96 EFKCSVCGKSFSSYQALGGHKTSHRVKLPTPPAAPVLAPAPVAALLPSAEDREP 149
>08_01_0207 -
1647168-1647251,1647583-1647726,1648176-1648287,
1648392-1648573,1648649-1648780,1648900-1649856,
1649949-1650734
Length = 798
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 428 TEVKKCLENPHVREILELLDSSANP-DELVQ 517
+E+++C ENP V E+ + LDS N D LV+
Sbjct: 139 SELRQCRENPRVSELEKDLDSRKNEIDRLVR 169
>11_06_0013 -
19252779-19252805,19252947-19253090,19253572-19253663,
19253757-19253835,19253965-19254031,19254163-19254254,
19254986-19255102,19255254-19255365,19255479-19255594,
19255680-19255756,19255912-19255993,19256077-19256214,
19258806-19259009
Length = 448
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -1
Query: 179 GNLCTYCHLIKRVYSYFHNIFLAYFLSVTYLFRLFGIFYVPN 54
GN+ + LI R Y H +F+ L VTYL L+G+ +VP+
Sbjct: 190 GNIGSGSMLITR---YHHQMFVGLVLVVTYLVILYGL-HVPD 227
>11_03_0072 +
9605273-9606814,9616982-9617016,9617271-9617348,
9617427-9617501,9617583-9617657,9617731-9617977,
9618070-9618313,9618852-9619309,9619388-9619675,
9619751-9619788,9619882-9620452
Length = 1216
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = +2
Query: 158 DSKYTNCPI--KFQPTHSEMN-CGTCRSDPKYKCPTCMVPYCSVACYKLHKQNPCIKPPS 328
D+K CP+ + Q H+ +N C R + C P C YK+ +++P
Sbjct: 205 DAKKIVCPLGLEVQKIHACLNDCILYRGEEYKNLEAC--PICKALQYKIRREDPGEVDGQ 262
Query: 329 PPKQTIGVK 355
P K I K
Sbjct: 263 PTKNIISAK 271
>04_04_1624 -
34849385-34849410,34849748-34851052,34852121-34852294,
34852386-34852456,34852563-34852618,34853047-34853185,
34853310-34853695,34853801-34853851,34853936-34854021,
34854112-34854553,34856241-34856315,34856457-34856593,
34856679-34856838,34856917-34857012,34857093-34857247,
34857900-34858032
Length = 1163
Score = 27.5 bits (58), Expect = 9.8
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
Frame = +2
Query: 191 QPTHSEMNCGTCRSDPKYKCPTCMVPYCSVACYKLHKQNPCIKPPSPPKQTIGVKQAVEN 370
Q + + CG C ++C TC PY + +K ++ P + N
Sbjct: 217 QINNPQSACGNCGLGDAFRCGTC--PYRGLPAFKPGEKVMTSLPDRGVSSSSSDPLCEGN 274
Query: 371 LYP-TEDTVPLDRLNLLENSTEVKKCLENPHVREILELLDSSAN 499
+ P + + + +L ++ T + C+ N DSSAN
Sbjct: 275 IAPCSSSSEQKEDCSLKQSKTSILSCVFNSPFNIFEAHQDSSAN 318
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,301,232
Number of Sequences: 37544
Number of extensions: 303118
Number of successful extensions: 888
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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