Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_H02
(862 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 31 0.16
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 29 0.85
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 28 2.0
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 27 3.4
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 27 4.5
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 6.0
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy... 26 6.0
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 6.0
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 26 7.9
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 7.9
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 26 7.9
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 7.9
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 26 7.9
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 31.5 bits (68), Expect = 0.16
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +1
Query: 412 H*PPHAALSIRDDFSGALLCSAPHSRGVSTCEVPQEEQKIKRSKLVLPKS 561
H P H LSI LC PH G TC + + ++ I R K L KS
Sbjct: 1318 HLPAHCPLSIVP-LEICFLCGTPHFSGRDTCPMLRNKEAIYRLKDSLSKS 1366
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 29.1 bits (62), Expect = 0.85
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 215 DETGELVTYGVNEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMSQTKK 370
DE + VT + E+ + + P F TPR PP + P P P + KK
Sbjct: 125 DEDDKHVTVEIVEDDDDEEIAYPKEGFV-TPRISPPPDVPLRPHKPKNAAKK 175
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 27.9 bits (59), Expect = 2.0
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = -1
Query: 346 FWKIRSLHRWNGPRCSKKGHRWIINHRLASFFVHTVSDQLARLVVEEEATSSGHPYLQRS 167
FWK+ L RW C + HR F VS+ LA+ V E S P +S
Sbjct: 606 FWKLDILDRWGIKHCLSNVSLQLHLHR----FHELVSENLAKAV--EYLQKSMQPQFDKS 659
Query: 166 PV 161
P+
Sbjct: 660 PL 661
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 543 TCTTEVRFMS*QVLSVEHAVKVSWLLG*GRCKTSDAIVTTTSEGLP 680
T TT + + + S +A + W+ G G C + IVT +S G+P
Sbjct: 42 TLTTLIYVVESAIWSNPYAETIRWM-GYGLCDITSRIVTCSSIGIP 86
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 349 SNESDKEVSSTQGKHNRRLQSH*PP--HAALSIRDDFSGALLCSAPHSRGVSTCEVPQE 519
+++ D + +H R+ + PP +RD + L A ++ GVST V QE
Sbjct: 497 TDDIDDKKDRALSEHVLRMHRYLPPGVEPGTPVRDSLNSVLNVGATNAAGVSTENVEQE 555
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 26.2 bits (55), Expect = 6.0
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +1
Query: 346 RSNESDKEVSSTQGKHNRRLQSH*PPHAALSIRDDFSGALLCSAPHSRGVSTCEVPQEEQ 525
+ SD + S RL S + L +DD S S S S E +EE
Sbjct: 6 KGGSSDSDAESVDSSEENRLTS-----SRLKKQDDSSSEEESSEEESASSSESESSEEES 60
Query: 526 KIKRSKLVLPK 558
+ + S++ +PK
Sbjct: 61 ESEESEVEVPK 71
>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 346 FWKIRSLH-RWNGPRCSKKGHRWII 275
+W R LH R+ PR K H+WII
Sbjct: 134 YWAHRFLHHRYVYPRLHKLHHKWII 158
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 278 NPTVSFFGTPRPIPPMETPNFPEGPMSQTKKFQALKENIIAGSNP 412
N + F GTPRP+ P+ P + + K + E+I+ NP
Sbjct: 92 NKSFDFSGTPRPMHPISHP-LSQHKTPEFKHRKRNVESILTPKNP 135
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 323 METPNFPEGPMSQTKKFQALKEN 391
M PN P+ P Q +KF+A+ N
Sbjct: 4 MTVPNTPQKPNLQQQKFEAINAN 26
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 242 GVNEETGEPMVN-NPTVSFFGTPRPIPPMETPNFPE 346
G+ ++ G + N N FG P+ P+E P+ PE
Sbjct: 85 GIRDKGGVEISNKNDPYIQFGKADPLEPLEKPDLPE 120
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 25.8 bits (54), Expect = 7.9
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +2
Query: 248 NEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMSQTKKFQALKENIIAGSNPISHRM 427
++E GE ++P + +PPM+ P FPE + Q F A P
Sbjct: 30 DKEDGEISEDDPVID---QSNSVPPMKVPTFPE-QIPQLPPFDRF-PGTNANFFPFGAPF 84
Query: 428 LLFPSVMIFP 457
+L P++M P
Sbjct: 85 MLPPALMFGP 94
>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = +1
Query: 283 NGVLFWN-----TSAHSTDGDSEFSRRSNESDKEVSSTQGKHNRRLQSH 414
NG+L +N T TD D F+R N S + + + H+ + SH
Sbjct: 307 NGLLHYNMETAETDESYTDLDDTFARLKNLSQRHTNHSTDHHDDTVDSH 355
>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -1
Query: 394 YVFLE-CLKLLCLTHWTFWKIRSLH-RWNGPRCSKKGHRWIINHRLASFFVH 245
Y+F L LL +W R+LH RW K H+WI+ +S H
Sbjct: 150 YLFFSIALFLLFSDFLIYWIHRALHHRWLYAPLHKLHHKWIVPTPYSSHAFH 201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,399,416
Number of Sequences: 5004
Number of extensions: 68023
Number of successful extensions: 198
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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