Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_H02
         (862 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U97000-11|AAC47993.1|  321|Caenorhabditis elegans Serpentine rec...    30   1.8  
U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    28   7.4  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    28   7.4  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    28   7.4  
AL032639-11|CAA21637.2|  426|Caenorhabditis elegans Hypothetical...    28   7.4  
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical
           protein F55C5.4 protein.
          Length = 1010

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = +2

Query: 365 KKFQALKENIIAGSNPISHRMLLF-PSVMIFPE 460
           +K  A++E+IIA +NP + R + F P+++I PE
Sbjct: 38  RKLWAVQEDIIANANPSTLRCIFFAPALLICPE 70


>U97000-11|AAC47993.1|  321|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 33 protein.
          Length = 321

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 54  FKKLSVEFLVFNFIVLFQLLVSVRLRRNT-KSC 149
           F +L + F VFN I  F   ++VR+ +NT K C
Sbjct: 38  FIQLYIVFFVFNIITFFNSFITVRIPQNTCKDC 70


>U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical
           protein R07E4.5 protein.
          Length = 817

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +1

Query: 301 NTSAHSTDGDSEFSRRSNESDKEVSSTQGKHNRRLQSH*PPHAALSIRDDFSGALLCSAP 480
           N + +  DG+S      N  +++ + T+G   RRLQ+  P +A    +D  +G LL    
Sbjct: 313 NENGYEGDGESGPITAENVKNEKTNLTKGGRKRRLQTLEPSNAKKG-KDAKNGDLLSEVK 371

Query: 481 HSRGVSTCE 507
           + +   T E
Sbjct: 372 NDKEAETKE 380


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 19/82 (23%), Positives = 33/82 (40%)
 Frame = +2

Query: 182  RMATARGFFFDDETGELVTYGVNEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMSQ 361
            R    + F   D    +V   +N++   P  N  T+      R  PP+E    P+G  S 
Sbjct: 1594 RKVDIKDFVSTDTAYAVVVQAINDDGPGPYSNQYTIRTMSRAREGPPVELRVEPDGQRSA 1653

Query: 362  TKKFQALKENIIAGSNPISHRM 427
              ++   KE + +   PI + +
Sbjct: 1654 VAQW---KEPVTSDVPPIGYEI 1672


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 19/82 (23%), Positives = 33/82 (40%)
 Frame = +2

Query: 182  RMATARGFFFDDETGELVTYGVNEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMSQ 361
            R    + F   D    +V   +N++   P  N  T+      R  PP+E    P+G  S 
Sbjct: 1657 RKVDIKDFVSTDTAYAVVVQAINDDGPGPYSNQYTIRTMSRAREGPPVELRVEPDGQRSA 1716

Query: 362  TKKFQALKENIIAGSNPISHRM 427
              ++   KE + +   PI + +
Sbjct: 1717 VAQW---KEPVTSDVPPIGYEI 1735


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 19/82 (23%), Positives = 33/82 (40%)
 Frame = +2

Query: 182  RMATARGFFFDDETGELVTYGVNEETGEPMVNNPTVSFFGTPRPIPPMETPNFPEGPMSQ 361
            R    + F   D    +V   +N++   P  N  T+      R  PP+E    P+G  S 
Sbjct: 1657 RKVDIKDFVSTDTAYAVVVQAINDDGPGPYSNQYTIRTMSRAREGPPVELRVEPDGQRSA 1716

Query: 362  TKKFQALKENIIAGSNPISHRM 427
              ++   KE + +   PI + +
Sbjct: 1717 VAQW---KEPVTSDVPPIGYEI 1735


>AL032639-11|CAA21637.2|  426|Caenorhabditis elegans Hypothetical
           protein Y38F1A.10b protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 307 SAHSTDGDSEFSRRSNESDKEVSSTQGKHNRRLQSH*PP 423
           S  S+DGD + S + N +DK V    G       +  PP
Sbjct: 79  STTSSDGDVQLSNKENSNDKSVGDKNGNTTTNKTTVEPP 117


>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical protein
            F41H10.3a protein.
          Length = 1140

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = +2

Query: 251  EETGEPMVNNPTVSF---FGTPRPIPPMETPNFPEGPMSQTKKFQALKENIIAGS 406
            EET E M ++P +S      T  P PP   P   +     T    AL + I AGS
Sbjct: 1019 EETAEKMSSSPLLSSQAPMTTLMPTPPPPAPAPAQASAQSTSATPALVDTISAGS 1073


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,986,918
Number of Sequences: 27780
Number of extensions: 395262
Number of successful extensions: 1234
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)