Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_G24
         (543 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           23   1.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.0  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   5.3  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   9.2  

>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -1

Query: 117 NNLRRFLDGFSPDTTHGLKLYSAAFDKNQREAKKSIGR 4
           N +++  +GF+    H     +AAF+ N R   K + +
Sbjct: 63  NRVKQVNNGFANLRQHIPNFIAAAFESNSRGGNKKLSK 100


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 260 ECLRRLIKCVANPAILFLRGLVGMIAISSHILLFVSKSSVNLV 132
           +CL +L K  +    L L G     AI S IL+FV    +++V
Sbjct: 143 KCLYKLWKMPSLSEFLSLFGTETCPAIGSAILIFVVLPELDVV 185


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 260 ECLRRLIKCVANPAILFLRGLVGMIAISSHILLFVSKSSVNLV 132
           +CL +L K  +    L L G     AI S IL+FV    +++V
Sbjct: 143 KCLYKLWKMPSLSEFLSLFGTETCPAIGSAILIFVVLPELDVV 185


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/40 (22%), Positives = 22/40 (55%)
 Frame = +1

Query: 277 SIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKML 396
           ++K +E++ ++  +     +    D+I+V+P+  D  K L
Sbjct: 265 AVKRKEKKAQKEKDKPNSTTNGSPDVIKVEPELSDSEKTL 304


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 56  YNFRPWVVSG 85
           Y++RPWV  G
Sbjct: 491 YDYRPWVQHG 500


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,244
Number of Sequences: 336
Number of extensions: 1956
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13306679
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)