Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_G24
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   1.5  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    23   2.7  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   2.7  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    23   2.7  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    23   2.7  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    23   2.7  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   2.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   8.1  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 414 WPATNTASYPGWLWWQA 464
           W  ++  S+P  +WW+A
Sbjct: 171 WICSSAISFPAIVWWRA 187


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 120 NNNLRRFLDGFSPDTTHGLKLYSAAFDKNQREAKK 16
           +N+LR    GF   ++H  +  S + D+N+   KK
Sbjct: 214 SNSLRSRTHGFQHTSSHYSRERSCSRDRNREYRKK 248


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 120 NNNLRRFLDGFSPDTTHGLKLYSAAFDKNQREAKK 16
           +N+LR    GF   ++H  +  S + D+N+   KK
Sbjct: 214 SNSLRSRTHGFQHTSSHYSRERSCSRDRNREYRKK 248


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 120 NNNLRRFLDGFSPDTTHGLKLYSAAFDKNQREAKK 16
           +N+LR    GF   ++H  +  S + D+N+   KK
Sbjct: 214 SNSLRSRTHGFQHTSSHYSRERSCSRDRNREYRKK 248


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 120 NNNLRRFLDGFSPDTTHGLKLYSAAFDKNQREAKK 16
           +N+LR    GF   ++H  +  S + D+N+   KK
Sbjct: 214 SNSLRSRTHGFQHTSSHYSRERSCSRDRNREYRKK 248


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 120 NNNLRRFLDGFSPDTTHGLKLYSAAFDKNQREAKK 16
           +N+LR    GF   ++H  +  S + D+N+   KK
Sbjct: 203 SNSLRSRTHGFQHTSSHYSRERSCSRDRNREYRKK 237


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 428 VSCRPLILLKSSIFNISLVSGSTSMMSCSRADTSGT 321
           ++C  + L  SS+  I+L  G ++ +S +R   +GT
Sbjct: 215 INCTYVALYPSSVQVIALGVGVSNFLSSTRTAETGT 250


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 120 NNNLRRFLDGFSPDTTHGLKLYSAAFDKNQREAKK 16
           +N+LR    GF   ++H  +  S + D+N+   +K
Sbjct: 214 SNSLRSRTHGFQHTSSHYSRERSCSRDRNREYKEK 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,951
Number of Sequences: 438
Number of extensions: 2402
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)