Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_G19
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 28 1.0
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 26 3.1
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 26 3.1
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple... 26 4.1
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 26 4.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 7.2
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 7.2
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 25 7.2
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 25 9.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 9.5
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 25 9.5
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -1
Query: 183 LGETNGSKRRAFVCFLHKEEVPESLQCR*N 94
L E GS R LH VP +LQCR N
Sbjct: 314 LEEFQGSPHRKARAMLHVASVPSTLQCRDN 343
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 192 GWVLGETNGSKRRAFVCFLHKEEVPESLQCR 100
G+ L +TN + VC+L K+ PE L R
Sbjct: 444 GFDLNKTNWFDSKGLVCYLMKQTSPEPLLIR 474
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 164 EPLVSPRTQPPPEIPDGPSHK 226
E V+PR PPP++P P HK
Sbjct: 149 EGFVTPRISPPPDVPLRP-HK 168
>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 313
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -1
Query: 195 GGWVLGETNGSKRRAFVCFLHKEEVPESLQC 103
GG G + AF CF++ + P+ ++C
Sbjct: 203 GGMAHGPCGEEFKAAFSCFVYSKSEPKGMEC 233
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 95 FHLHCRLSGTSSLCRKHTNALRFEPLVSPRTQP 193
F +HC L+ + + + +T LR + PR +P
Sbjct: 155 FDIHCDLNINNDVAKINTKMLRLFVSIDPRVRP 187
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = +2
Query: 221 HKHAHNYYYTRDARREVAPPIDVTKELLSASSDKGAPKQAANVRPT 358
H H+H+ + R+ +E + K + D+G P Q A T
Sbjct: 724 HGHSHSKSHDREKEKEKKKDREHRKHRETEEEDEGPPPQPARPEST 769
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -1
Query: 237 LWACLCEGPSGISGGG 190
LW LC GI GGG
Sbjct: 179 LWLVLCRAVQGIGGGG 194
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -1
Query: 237 LWACLCEGPSGISGGG 190
LW LC GI GGG
Sbjct: 179 LWLVLCRAVQGIGGGG 194
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 233 HNYYYTRDARREVAPPIDVTKEL-LSASSDK 322
HNY++ V + +TKEL LS S D+
Sbjct: 903 HNYFFAEAHASSVTGVLSITKELLLSVSIDQ 933
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2
Query: 191 PPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVT 292
PPP P P+ + YY + E P ID T
Sbjct: 775 PPPPPPPPPAVSAGGSRYYAPAPQAEPEPKIDET 808
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 189 SLLQKSQTDPRTSMPTTTITQETLDAKLHLQ 281
SLL K+ ++ S PTTT T+ DA+L+ Q
Sbjct: 528 SLLYKATSNK--SRPTTTSTELKTDARLNFQ 556
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,160
Number of Sequences: 5004
Number of extensions: 41748
Number of successful extensions: 122
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -