Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_G19
(540 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11987| Best HMM Match : OTU (HMM E-Value=1.1e-24) 36 0.016
SB_4753| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.037
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_41578| Best HMM Match : Apc15p (HMM E-Value=2.4) 29 3.2
SB_45977| Best HMM Match : MBT (HMM E-Value=0) 28 4.2
SB_33597| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_31892| Best HMM Match : AAA (HMM E-Value=6.2e-25) 28 5.6
SB_26867| Best HMM Match : Acyltransferase (HMM E-Value=4.4) 28 5.6
SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10) 27 7.4
SB_28109| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26) 27 9.8
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84) 27 9.8
SB_13608| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_11987| Best HMM Match : OTU (HMM E-Value=1.1e-24)
Length = 1142
Score = 36.3 bits (80), Expect = 0.016
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 120 ELPPCVGSIQMPFVLSHWFRLEPSLLQKSQTD--PRTSMPTTTITQETLDAKLHLQL 284
E P V + Q P W RL+ + Q QTD P TS P T +T T + H QL
Sbjct: 478 EQAPSVEAGQEPSPAEFWSRLKNAKTQSKQTDSSPSTSKPATPVTSPTEGKQSHSQL 534
>SB_4753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 596
Score = 35.1 bits (77), Expect = 0.037
Identities = 25/100 (25%), Positives = 42/100 (42%)
Frame = +2
Query: 110 RLSGTSSLCRKHTNALRFEPLVSPRTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDV 289
++ G+ L ++ LR SP +PPP + P H+ H + ++R A
Sbjct: 474 KVDGSGRLTLRNRRFLRAYTPASPDIKPPPAVA-TPPHQPCHTSEQRQRSQRPPALSPQR 532
Query: 290 TKELLSASSDKGAPKQAANVRPTPGHLYAWDKHYE*TCDP 409
T + S+ G+P+++ P H H E CDP
Sbjct: 533 TPTTTPSPSELGSPEKSPFADSDPQHESYARSHLE-QCDP 571
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/69 (26%), Positives = 27/69 (39%)
Frame = +2
Query: 161 FEPLVSPRTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKELLSASSDKGAPKQA 340
++P SP PP PS Y ++ + +V PP L + G P
Sbjct: 761 YDPSESPAGMTPPPTSTSPSGWQGRGRYPSQPSPTDVLPP------TLPQAPYPGGPPSM 814
Query: 341 ANVRPTPGH 367
+ + P PGH
Sbjct: 815 SGMPPPPGH 823
>SB_41578| Best HMM Match : Apc15p (HMM E-Value=2.4)
Length = 391
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 126 PPCVGSIQMPFVLS-HWFRLEPSLLQKSQTDPRTSMPTTTITQETLDAKLH 275
PP S Q+ L+ HW EPS + TDP P+ + Q+T+D ++H
Sbjct: 315 PPSKPSTQIFIGLAIHW-PSEPST--QRTTDPDIHRPSDPLAQQTIDPEIH 362
>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
Length = 1198
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 182 RTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKELLSASSDKG 325
+ +PP IPD P +H N+Y ++ + +L+ + DKG
Sbjct: 2 KPRPPNLIPDPPEFRHYGNHYGESSWNKDSFRALLENNDLVDPNLDKG 49
>SB_33597| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 609
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 104 HCRLSGTSSLCRKHTNALRFEPLVSPRTQPPPEIP-DGPSHKH 229
H ++GT + R H PLV P PPP IP D P +H
Sbjct: 169 HALINGTPIVSRPHPG-----PLVGPLA-PPPHIPLDSPRQEH 205
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +2
Query: 113 LSGTSSLCRKHTNALRFEPLVSPRTQPPPEIPDGPS 220
L GT + + P SP+T P P IP PS
Sbjct: 642 LPGTPPETKTKPPLAPYPPKTSPKTTPKPHIPPAPS 677
>SB_31892| Best HMM Match : AAA (HMM E-Value=6.2e-25)
Length = 420
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 168 HWFRLEPSLLQKSQTDPRTSMP--TTTITQETLDAKLHLQLMLPRNCLVLAQTKG 326
HW R+E S ++ D T P T T+T D ++ L+ + LA+T+G
Sbjct: 111 HWIRVERS--REKMVDLTTGAPWETVTLTMLGRDKQVFFDLLDEARTMALAKTEG 163
>SB_26867| Best HMM Match : Acyltransferase (HMM E-Value=4.4)
Length = 655
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = +2
Query: 98 HLHCRLSGTSSLCRKHTNALRFEPLVSPRTQPPPEIPDGPSHKHAHNY 241
H+H T +L H + L + + T P I PSH H Y
Sbjct: 563 HIHTYSHSTGTLSDPHPHVLTLKRNLLRFTSPRTRIQQKPSHIQIHTY 610
>SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)
Length = 282
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 254 DARREVAPPIDVTKELLSASSDKGAPKQAANV 349
+A +++ P DV K L+ +SDK PK+ A V
Sbjct: 119 EAAKDIKKP-DVQKRPLAVNSDKSPPKKVAKV 149
>SB_28109| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 379
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 149 NALRFEPLVSPRTQPPPEIPDGPSHKH 229
N +E +VSP TQ P +GP KH
Sbjct: 124 NPFHYERVVSPGTQQDPVEDNGPISKH 150
>SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)
Length = 1362
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 186 PSLLQKSQTDPRTSMPTTTITQET 257
PSLLQ S + P ++ T +I Q+T
Sbjct: 284 PSLLQSSDSSPNSTSSTPSINQQT 307
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 174 FRLEPSLLQKSQTDPRTSMPTTTITQETLDAKLHLQLMLPRNCLVLA 314
+ + + Q T T+ PTTTI + LH Q + P +LA
Sbjct: 680 YHIVSGMCQDFPTTVLTTAPTTTIPTTSPACNLHCQTLQPDGTCILA 726
>SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)
Length = 1737
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 123 LPPCVGSIQMPFVLSHWFRLEPSLLQKSQTDPRTSMPTTT 242
+P C+ I +P V S ++EP L S S+ T +
Sbjct: 531 IPSCIAPIGLPAVTSSTMKVEPPQLSTSHVSSTCSIVTAS 570
>SB_13608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +2
Query: 197 PEIPDGPSHKHAHNYYYTRDARREVAP-PIDVTKELLSASSDKGAPKQAANVRPTPG 364
P P P H+ + + +R P P+D+ + D PK A++ PT G
Sbjct: 510 PTPPGSPQHEKNTTHGVVKVPQRSRTPQPLDLPCSTMPKRLDYNRPKSASSPTPTGG 566
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,696,687
Number of Sequences: 59808
Number of extensions: 329263
Number of successful extensions: 914
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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