Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_G17
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 28 1.8
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 27 2.4
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 27 3.1
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 27 3.1
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 26 5.4
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 26 7.2
SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transf... 26 7.2
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 26 7.2
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|... 26 7.2
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -1
Query: 326 CYDCLIRITILTLDARREYEAVVCEFEFF*RSSKYVWIRSLKKFC*LLSRFLCDSQHPPK 147
C + LI++ LD E+EA++ + F K L+ C S F SQH P+
Sbjct: 283 CLNKLIQLNSAFLD---EFEAIMSDLNFEDIDEKKFEEIDLRLACCFESHFFAFSQHYPR 339
Query: 146 Y 144
Y
Sbjct: 340 Y 340
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 27.5 bits (58), Expect = 2.4
Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 3/128 (2%)
Frame = +3
Query: 162 GITQKSREQLAKLLQTTNPNVLATALEEFKFTNNSLIFAPCIESQNSDPNETI--ITDAP 335
G K+ E + K+ + T E + + +S++SD T+
Sbjct: 284 GDDYKAVETIHKIARINGKTCTLTVEELYAIDRQEQEESDLDDSKSSDAKSVTQGTTNLI 343
Query: 336 LNILRSGNYNHVPYIAGFTTREGTLRASEVVFNRWLEGMEANFTN-FLPVDLDTNGNATA 512
+ LR N+ H+ G +R+ + + V+ + + G+ N FLP L+T GNA
Sbjct: 344 VEKLRKYNFEHIRQCFG--SRKLAISSILVILSWAVIGLAFPLYNAFLPYYLETRGNANE 401
Query: 513 VQDIKRFY 536
+ + Y
Sbjct: 402 PLSVAKTY 409
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 51 RSKNLVHKAIALSGSALSPWAVAYEPVR 134
R+K ++H+A+ L L P ++PVR
Sbjct: 117 RNKQMIHRAVILLVPGLEPSQFGFQPVR 144
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 452 HTLEPSIKDNFGSPQRALSSRETGDVRNVIVI 357
H LE ++ NF +P A S + +RN+I +
Sbjct: 764 HLLESLLESNFSTPDGANDSNNSVTIRNLIAL 795
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = +3
Query: 414 ASEVVFNRWLEGMEAN---FTNFLPVDLDTNGNATAVQDI 524
ASE ++ R + G+ + +TN+ ++TNG+A V+++
Sbjct: 90 ASEHIYERGIAGIPHSVDLWTNYCAFKMETNGDANEVREL 129
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +3
Query: 426 VFNRWLEGMEANFTNFLPVDLDTNGNATAVQDIKRFYFGDRTIDMGTIED 575
+FN+ +EGM ++ +D D G T + + Y+G T+ + +++
Sbjct: 156 LFNQIMEGMHIVSSHVSSLDRDLQGRFTMEMGLIQSYYGRDTLALQLMKE 205
>SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transfer
protein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 7/36 (19%)
Frame = +2
Query: 5 SWFGRSA---SRSVDHVSEIQEP----RPQSYCAEW 91
SWF + S+S D VS E P SYCA+W
Sbjct: 21 SWFSSFSFGESKSTDLVSSTSEKIPGANPASYCADW 56
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 543 DRTIDMGTIEDYLDYQGDTLILLAVIRTARERGVTSTSPVRLLEFGYRGTLNSDWPFNQI 722
++ I + T++DY+ Y D+ ILL ++ +A + S V E G + W +++
Sbjct: 202 EQGIQVSTLKDYVQYLPDSEILLDMV-SAIADAIASKEQV---ESGTKNVYELHWSMSRL 257
Query: 723 PL---HGVKHGGFLN 758
+G H G +N
Sbjct: 258 LACIKNGEVHKGLIN 272
>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -2
Query: 355 PERKMFNGASVMIVSLGSLF*LSMQGANMRLLFVNLNSSSAVASTFGFVV*RSFANC 185
P RK+ + S+ VS S S+ +R NL + S S GF R+F+ C
Sbjct: 67 PTRKLVHHISLNNVSYASK--ASITSRLLRRCATNLETFSGPQSGLGFTALRAFSQC 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,414,917
Number of Sequences: 5004
Number of extensions: 73369
Number of successful extensions: 226
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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