Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_G17
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 31 1.1
08_01_0830 + 8055118-8056698 31 1.4
05_05_0092 - 22323049-22323224,22323840-22323887,22323962-223240... 30 1.9
05_05_0095 - 22347552-22347696,22347988-22348094,22348114-223482... 29 3.2
01_01_0632 - 4761091-4761198,4761311-4761412,4762248-4762376,476... 29 3.2
04_04_0260 + 23996775-23996865,23997031-23997566,23998407-239988... 29 4.3
06_03_1272 - 28887034-28887069,28887282-28887482,28887599-28887709 28 7.5
>04_03_0998 -
21555696-21556080,21556177-21556254,21556333-21556424,
21556524-21556620,21557113-21557141,21557620-21557781,
21557981-21558061,21558156-21558314,21558394-21558510,
21558598-21558666,21558753-21558831,21560884-21561050,
21561109-21561229,21561522-21561649,21562293-21562361,
21562408-21562539,21562619-21562991,21563274-21563398,
21563500-21563655,21563785-21564198,21564634-21564691,
21566522-21566648,21568047-21568305,21569005-21569104,
21569231-21569317,21569454-21569692,21569914-21569999,
21570409-21570532,21571111-21574332
Length = 2444
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 249 KFTNNSLIFAPCIESQNSDPNETIITDAPLNILRSGNYN 365
K N+++ F CIES+ S+P D PL + S N+N
Sbjct: 326 KAVNSTVTFVSCIESELSNPRN---ADNPLGLNHSNNFN 361
>08_01_0830 + 8055118-8056698
Length = 526
Score = 30.7 bits (66), Expect = 1.4
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
Frame = +3
Query: 375 YIAGFTTREGTLRASEVVFNRWLEGMEANFTNFLPVDLDTNGNATAVQD----IKRFYFG 542
YI G R E++F RW ++ +F L D ++ +V+D IKR+
Sbjct: 102 YIQELIRAFGRRRPDELIFQRWFSQLDVDFVLVLHTDGMVRADSFSVEDLMALIKRWIRA 161
Query: 543 DRT----IDMGTIEDYLDYQGDTLILLAVIRTARERGVTSTSPVRLLEFGYRGTLNS 701
T +++ +E L G T + A A+ G S +R+L F TL++
Sbjct: 162 LLTMVQVLNITLLELPLPVAGSTERMAAAADHAQFTGFAEESILRMLAFVDAVTLSA 218
>05_05_0092 -
22323049-22323224,22323840-22323887,22323962-22324016,
22324260-22324360,22324457-22324518,22324683-22324881,
22325107-22325254,22325331-22325377,22325928-22325995,
22326428-22326542,22326657-22326816
Length = 392
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +3
Query: 33 LLTMSPRSKNLVHKAIALSGSALSPWAVAYEPVRYA 140
LL+ PR H A + +G A P +VA E VRYA
Sbjct: 12 LLSPKPRPPRARHYATSSTGGATQPESVAAEMVRYA 47
>05_05_0095 -
22347552-22347696,22347988-22348094,22348114-22348236,
22348325-22348458,22348766-22348874
Length = 205
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 582 DYQGDTLILLAVIRTARERGVTSTSPVRLLEFGYRGTL 695
D GD +L V+R A++ + T + L++ Y GTL
Sbjct: 6 DLTGDGGVLKTVVRKAKDDAIAPTDSLPLVDVHYEGTL 43
>01_01_0632 -
4761091-4761198,4761311-4761412,4762248-4762376,
4763169-4763297,4763419-4763508,4763869-4763918,
4764984-4765115,4765218-4765376,4765723-4765759,
4766304-4766339
Length = 323
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 459 NFTNFLPVDLDTNGNATAVQDIKRFYFGDRTIDMGTIEDYLDYQGD 596
N FL +L + N +DI F + D+ T+E +LD+ GD
Sbjct: 58 NVCKFLVEELGGDVNIAGKEDITPFMAAAESGDVPTVEYFLDHSGD 103
>04_04_0260 +
23996775-23996865,23997031-23997566,23998407-23998892,
23998989-23999152,23999220-23999281,23999753-23999907,
24000625-24000738,24001701-24002233,24002512-24002609,
24003108-24003398,24003764-24003830,24003905-24003983
Length = 891
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 111 AVAYEPVRYAEVFGGVLGITQKSREQLAKLLQTTNPNVLATALE 242
+V P ++ +F + IT EQLA L +T+P+V+A A +
Sbjct: 347 SVEEHPTKHRRLFSSI-DITVSLMEQLAHLTTSTSPDVVAAAAD 389
>06_03_1272 - 28887034-28887069,28887282-28887482,28887599-28887709
Length = 115
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +3
Query: 78 IALSGSALSPWAVAYEPVRYAEV--FGGV-LGITQKSREQLAKLLQT 209
+++SGS +A + EP Y E+ GG+ G+ K LA++L+T
Sbjct: 41 VSISGSVPMSFAASEEPAAYGELMSIGGIGPGVNGKLSAALAEILET 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,996,933
Number of Sequences: 37544
Number of extensions: 501516
Number of successful extensions: 1210
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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