Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_G16
         (615 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    23   1.5  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    23   1.5  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    23   2.7  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    23   2.7  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    23   2.7  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   4.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.2  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 510 TLVRIIYSLSLNLFCLSVYYLLIYTIM 590
           TLV +IY+ +L   C   Y+LL+   M
Sbjct: 312 TLV-VIYTFNLFYLCFCFYWLLVMVAM 337


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 510 TLVRIIYSLSLNLFCLSVYYLLIYTIM 590
           TLV +IY+ +L   C   Y+LL+   M
Sbjct: 268 TLV-VIYTFNLFYLCFCFYWLLVMVAM 293


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -3

Query: 220 VPFEATSHALLSGVN*FATFRALRVISGFERHCARLTYPVRRVG 89
           V F  T  ALL G   + T   L +I+    +CA      R VG
Sbjct: 141 VVFLLTLSALLEGFTLYHTTAYLHIITMINMNCALWYINCRAVG 184


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -3

Query: 220 VPFEATSHALLSGVN*FATFRALRVISGFERHCARLTYPVRRVG 89
           V F  T  ALL G   + T   L +I+    +CA      R VG
Sbjct: 141 VVFLLTLSALLEGFTLYHTTAYLHIITMINMNCALWYINCRAVG 184


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -3

Query: 220 VPFEATSHALLSGVN*FATFRALRVISGFERHCARLTYPVRRVG 89
           V F  T  ALL G   + T   L +I+    +CA      R VG
Sbjct: 141 VVFLLTLSALLEGFTLYHTTAYLHIITMINMNCALWYINCRAVG 184


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/39 (25%), Positives = 15/39 (38%)
 Frame = +2

Query: 17  RTSRTAVSASPPWNCTRVRELDSRSDSTNRIS*ASTMPF 133
           R +R  V  +P W C R     +        + A  MP+
Sbjct: 43  RAARPGVVTTPRWGCARASSATTMGGPRYGRAAAQGMPY 81


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +3

Query: 39  RHHRPGTVHASGSSTLVPTRRTG*VKRAQCLS 134
           R  +PGT+ A   S L   R  G      C S
Sbjct: 496 RKPKPGTIFAKLLSVLTELRTLGNQNSEMCFS 527


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,252
Number of Sequences: 336
Number of extensions: 2509
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)