Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_G15
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    29   0.54 
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.9  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   5.0  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    26   6.6  
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    26   6.6  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   8.8  

>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 540 NSAQTSSPPMQSILT*SLGRAPTIKLVEGRLHW*FSSSPSVHQHC 406
           N A T  P ++ +L       PT  +VEGR  W     P   ++C
Sbjct: 213 NKALTECPTIKKVLVFQRSAEPTASMVEGRDVWWHDIIPKFPRYC 257


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 286 HNTDDSLIIVFSSETSLFTFVFESRIANTTPNRMETNLF 170
           +N DD    VF +E     FV + R+ N   NRM + +F
Sbjct: 13  NNDDDDFEPVFLNEQDQDAFVEQLRLTNNRDNRMFSIIF 51


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -2

Query: 432  SSPSVHQHCSGHADTDANASNNNISILKSRPVVLGKRNYPSYSHGTALNTT 280
            ++PS       ++   A+++NN  +   + P   G  N P++S G+A + T
Sbjct: 893  TTPSPAFSFGNNSGVKASSNNNPSTNSSTAPFSFGTSNKPAFSFGSATSKT 943


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 13   IAACWRSVAPSVLSKYRFKVIVQCRILLPIVTDVINSVNVQ 135
            I A W S  PS+L+       +  R+ + I+T+ I S N++
Sbjct: 906  ILAPWPSETPSLLAYMINSTDIVGRVCIQILTNPIQSTNIE 946


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -1

Query: 703 LEGVRVQGVDGVXEHDSLHVLGVNLLQQTRERRQRALAQGEA 578
           L+G  +   D V   D L  + +++ ++  E+R++ LA+ EA
Sbjct: 336 LDGKNLSQHDQVLREDRLRAIELSVQKEIEEKRRQLLAREEA 377


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +1

Query: 64   FKVIVQCRILLPIVTDVINSVNVQRR-NGSR 153
            F   V+C+++  IVTD+  S+++ RR NG +
Sbjct: 937  FLYYVECQVIGDIVTDLEYSISLVRRINGEK 967


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,743,456
Number of Sequences: 5004
Number of extensions: 53261
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)