Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_G15
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0415 - 9981345-9981440,9981716-9981784,9982035-9982155,998... 29 4.0
06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645... 29 5.2
12_02_1235 - 27233480-27233986 28 6.9
08_02_0298 - 15477119-15477724,15478105-15478333,15478368-154784... 28 6.9
01_06_1416 - 37174913-37175006,37175299-37175441,37175932-371760... 28 6.9
01_01_0381 - 2961422-2963917 28 6.9
04_03_0910 + 20751014-20753437 25 7.5
04_04_0336 + 24500665-24502647 28 9.2
01_01_0490 + 3620523-3623403,3623524-3623996 28 9.2
>02_02_0415 -
9981345-9981440,9981716-9981784,9982035-9982155,
9982441-9982622,9983320-9984921
Length = 689
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 557 PATTQL-PSLSLRECSLPPLSCLLQKV 634
PATT P+ SLR LPPLSC ++V
Sbjct: 18 PATTSSSPAASLRRLLLPPLSCHARQV 44
>06_02_0064 +
11062798-11063568,11064212-11064261,11064354-11064510,
11064598-11064816,11065301-11065429,11066502-11068031,
11068654-11069013,11069086-11069205,11069727-11069897,
11070022-11070180,11070327-11070452,11070660-11070968
Length = 1366
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 688 RGRLQGPGDHCAHDV 732
RGRL GPGD HDV
Sbjct: 176 RGRLLGPGDRAVHDV 190
>12_02_1235 - 27233480-27233986
Length = 168
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 625 QQTRERRQRALAQGE-ARQLRGRGRVYLGELRADQLAAHAVYIDIVPGPRAHNQVGRGTA 449
++ R R +R ++ E AR+ R R + +L ELRA A A D+V A + R A
Sbjct: 60 EERRRRLRRRISNRESARRSRARKQRHLDELRAKASALRATSRDLV----ARLRGARARA 115
Query: 448 ALV 440
ALV
Sbjct: 116 ALV 118
>08_02_0298 -
15477119-15477724,15478105-15478333,15478368-15478498,
15478556-15478891
Length = 433
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Frame = +3
Query: 57 ISLQSYRSVQDIVTDCYRCDKQCQCAA--------SQWFPTCQGPTNRLVSIRFGVVFAI 212
+ ++ Y +V D +T+ DKQCQ +A S++ +CQ +++ V+ I
Sbjct: 178 LDIRRYGTVVDQLTEMLVKDKQCQISAAAILEHLCSRFLKSCQLSKQDAINLLTTVLGLI 237
Query: 213 RDSNTKVNRLVSDEKT 260
SNT+ N + + +
Sbjct: 238 LSSNTERNAVAGSDSS 253
>01_06_1416 -
37174913-37175006,37175299-37175441,37175932-37176027,
37177125-37177364,37177456-37177812,37178020-37178097,
37178387-37178434,37179406-37179675,37179954-37180054,
37180452-37180605
Length = 526
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -1
Query: 712 PQALEGVRVQGVDGVXEHDSLHVLGVNLLQQTRERRQRALAQG 584
P L + +Q +D + E +LG+ LQQ+ E+ + ALAQG
Sbjct: 331 PSDLLKILIQQLDPLTEQQ---MLGIYSLQQSSEQAEEALAQG 370
>01_01_0381 - 2961422-2963917
Length = 831
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 530 CAEFPEIDTPATTQLPSL--SLRECSLPPLSCLLQKV 634
C + E+D P Q+ + + +C +PPL LLQ++
Sbjct: 772 CIQEDEVDRPTMGQVVQILEGVLDCDMPPLPRLLQRI 808
>04_03_0910 + 20751014-20753437
Length = 807
Score = 24.6 bits (51), Expect(2) = 7.5
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 530 CAEFPEIDTPATTQLPSL--SLRECSLPPLSCLLQKVHAEDVKT 655
C + E+D P ++ + L E LPP+ LLQ + KT
Sbjct: 760 CIQENELDRPTMGKVVQILEGLLELDLPPMPRLLQSIVQSSWKT 803
Score = 21.8 bits (44), Expect(2) = 7.5
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = +2
Query: 395 ACPEQCWCTDGEELN 439
AC CWC EL+
Sbjct: 753 ACKLACWCIQENELD 767
>04_04_0336 + 24500665-24502647
Length = 660
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 458 STNLIVGARPRDYVNIDCMGGELVCAEFPEIDTPATTQLPSLSLRECSL 604
ST+ IV + R +D +GG+LV + P ++ + + S + EC L
Sbjct: 230 STSSIVSSHVRKICLVDDIGGQLVKSLAPTVNLLMSQAISSDGVSECKL 278
>01_01_0490 + 3620523-3623403,3623524-3623996
Length = 1117
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -1
Query: 727 HERSDPQALEGVRVQGVDGVXEHDSLHVLGVNLLQQTRERRQRALAQGEARQLRG 563
H + DP + R+QG + L LG+ LL + R + A LRG
Sbjct: 1010 HRKRDPAEVIDSRLQGRSDTQVQEMLQALGIALLCASTRPEDRPTMKDVAALLRG 1064
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,519,394
Number of Sequences: 37544
Number of extensions: 398449
Number of successful extensions: 1178
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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