Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_G11
(374 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 27 0.96
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 27 0.96
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 25 2.9
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 3.9
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|... 25 5.1
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 24 6.8
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 24 9.0
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 24 9.0
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c... 24 9.0
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ... 24 9.0
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 24 9.0
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 24 9.0
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 27.1 bits (57), Expect = 0.96
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 12 CGG-IGIXLPMLEQIINIVGALFYSILGLIIPGVIETVFRWEDLGRWNWVFWKNLLI 179
CGG + +++ + G + LG I +I LG W WVFW N+++
Sbjct: 209 CGGTLSDLFTPIQRTYVLPGFCTFPFLGPIFGPIIGDFICQSYLG-WCWVFWINMIM 264
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 0.96
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 147 WNWVFWKNLLIVLFGVCSLVSGCTVSVMDIINILN 251
W W +W N+++ F V V C + +INI+N
Sbjct: 241 WRWFYWMNMIVGGFFVILCVL-CP-ETLPVINIMN 273
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 2.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 211 PDTKEQTPKRTINRFFQKTQFHLPRSSHLNTVS 113
P+ K+QTPK N TQ HL ++ T S
Sbjct: 624 PNWKKQTPKAISNSSDNMTQLHLDLANSTVTCS 656
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 3.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 189 QRGQSIDFSKKPNSICPDL 133
+R SIDF P ++CP L
Sbjct: 442 KRSNSIDFPTPPKALCPKL 460
>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 24.6 bits (51), Expect = 5.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 167 FPKNPIPSAQIFPSKYCLDYTWYY 96
FPKNP P+ Q S + +++ +Y
Sbjct: 97 FPKNPTPTQQNDMSSFLYNFSKFY 120
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 24.2 bits (50), Expect = 6.8
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 66 GALFYSILGLIIPGVIETVFRWEDLGRWNWVFWKNLL 176
G + LG II +I F + W W FW N++
Sbjct: 235 GFCTFPYLGPIIGPIIGD-FITQSYLEWRWTFWINMI 270
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 23.8 bits (49), Expect = 9.0
Identities = 22/76 (28%), Positives = 31/76 (40%)
Frame = -2
Query: 232 SMTLTVQPDTKEQTPKRTINRFFQKTQFHLPRSSHLNTVSITPGIMSPNME*NSAPTMLM 53
S +L QP T + +QF SS +N+V TP +M PN +M
Sbjct: 181 SASLYKQPSFNSNPAPITTSSATHTSQFSTSSSSSVNSVH-TP-VMVPNPYFQYNSSMTA 238
Query: 52 ICSSIGNXMPIPPQIQ 5
SS + P P+ Q
Sbjct: 239 PSSSSSSVAPFVPRRQ 254
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 23.8 bits (49), Expect = 9.0
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -2
Query: 232 SMTLTVQPDTKEQTPKRTINRFFQKTQFHLPRSSHLNTVS 113
S L V+ + E + K N+F HL + H+ TV+
Sbjct: 321 SAALAVEKNCIEGSLKYLENQFLSLIDLHLSDAGHITTVN 360
>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 23.8 bits (49), Expect = 9.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 132 EDLGRWNWVFWKNLLIVLFGVCSLV 206
EDL +VFW ++LI +F + ++
Sbjct: 18 EDLKELRFVFWFSVLIPIFFIALII 42
>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 306
Score = 23.8 bits (49), Expect = 9.0
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +3
Query: 51 IINIVG-ALFYSILGLIIPGVIETVFRW 131
+I+ +G A+FYSIL L G F W
Sbjct: 216 VISPIGEAIFYSILDLFEFGFFGAAFSW 243
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 23.8 bits (49), Expect = 9.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 90 GLIIPGVIETVFRWEDLGRWN 152
GLI PG+I T E L WN
Sbjct: 149 GLIHPGIIGTAPSKEILAEWN 169
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 23.8 bits (49), Expect = 9.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 166 FQKTQFHLPRSSHLNT 119
F KT + LPR S LNT
Sbjct: 21 FVKTSYKLPRKSWLNT 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,267,958
Number of Sequences: 5004
Number of extensions: 25003
Number of successful extensions: 84
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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