Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_G11
         (374 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0002 - 4477-6144,6571-7440                                       28   2.7  
11_01_0003 - 6099-7766,8193-9062                                       28   2.7  
04_04_0819 - 28312667-28313219,28315157-28316430                       27   4.8  
01_01_1106 + 8750597-8754031                                           27   4.8  
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376...    26   8.4  
04_01_0362 - 4742441-4743840,4743854-4744127                           26   8.4  

>12_01_0002 - 4477-6144,6571-7440
          Length = 845

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 40  CWNRSSTLSEHCSTPYW 90
           CW  ++T+S  C+TP W
Sbjct: 344 CWPNTNTISSICTTPTW 360


>11_01_0003 - 6099-7766,8193-9062
          Length = 845

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 40  CWNRSSTLSEHCSTPYW 90
           CW  ++T+S  C+TP W
Sbjct: 344 CWPNTNTISSICTTPTW 360


>04_04_0819 - 28312667-28313219,28315157-28316430
          Length = 608

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 16/80 (20%), Positives = 37/80 (46%)
 Frame = +3

Query: 3   VWICGGIGIXLPMLEQIINIVGALFYSILGLIIPGVIETVFRWEDLGRWNWVFWKNLLIV 182
           V + G + + +P     +++VG+    +LG ++P          ++G W  +   ++ ++
Sbjct: 344 VMVVGLMAMLVPNFADFLSLVGSSVCVLLGFVLPAAFHLKVFGAEVG-WPGLA-GDVAVI 401

Query: 183 LFGVCSLVSGCTVSVMDIIN 242
           + G    VSG   S+  I +
Sbjct: 402 VVGTALAVSGTWTSLAQIFS 421


>01_01_1106 + 8750597-8754031
          Length = 1144

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 170 IFPKN-PIPSAQIFPSKYCLDYTWYYESQYGVEQCSDNVDDLFQH 39
           +FP+N  I   ++      L +     S+YG +  SD  DD F+H
Sbjct: 280 VFPRNHEIDKGKLIQQWVALGFV--EPSKYGCQPVSDKADDCFEH 322


>06_01_0520 +
           3761990-3762327,3763304-3763589,3763746-3763820,
           3764013-3764961,3766967-3767064,3768144-3768284,
           3768758-3768874,3768924-3769013,3769014-3771818
          Length = 1632

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -2

Query: 265 QTVFLFKIFIISMTLTVQPDTKEQTPKRTINRFFQKTQFHLPRSSHLNT 119
           + ++ +KI +  +     P T  +T     +  F   +F LPRSS+L T
Sbjct: 257 RVIYDYKISLAHLGREFSPRTHNKTFSSHSSSTFCNNRFSLPRSSYLYT 305


>04_01_0362 - 4742441-4743840,4743854-4744127
          Length = 557

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 126 RWEDLGRWNWVFWKNLLIVLFGVCSL 203
           R  D   WNW + K +L++   VC++
Sbjct: 213 RLRDSSLWNWTYDKAVLLLARAVCAI 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,825,975
Number of Sequences: 37544
Number of extensions: 149818
Number of successful extensions: 370
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)