Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_G11
         (374 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.39 
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     24   0.51 
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   6.3  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   6.3  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                20   8.3  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.6 bits (51), Expect = 0.39
 Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = +3

Query: 132 EDLGRWNWVF-WKNLL 176
           + L +WNWV+ WK L+
Sbjct: 622 QHLDQWNWVYEWKELI 637


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 24.2 bits (50), Expect = 0.51
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 121 YLDGKIWADGIGFFGKIY 174
           +LD  +WADG+  F +++
Sbjct: 36  FLDNSVWADGLLVFYEVF 53


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 86  IGTHNTRCNRDSI 124
           +GTH  +CN  SI
Sbjct: 96  LGTHGRQCNDTSI 108


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 86  IGTHNTRCNRDSI 124
           +GTH  +CN  SI
Sbjct: 97  LGTHGRQCNDTSI 109


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 110 YTWYYESQYGVEQCSDNVDDLFQ 42
           +T  Y S  G     DN+DD F+
Sbjct: 260 HTIIYLSAKGHRPIDDNIDDEFK 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,055
Number of Sequences: 438
Number of extensions: 1741
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)