Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_G10
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.7  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   5.1  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   5.1  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   9.0  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   9.0  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 275 LVSIYLCLRIVVLSLSTLAPE 213
           LVSI +C+ +VVL++   +P+
Sbjct: 317 LVSISICVTVVVLNVHFRSPQ 337


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 275 LVSIYLCLRIVVLSLSTLAPE 213
           LVSI +C+ +VVL++   +P+
Sbjct: 317 LVSISICVTVVVLNVHFRSPQ 337


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 424 FAFQRLQTLKINIFKFITDVKNIFSSFIKNVYM 326
           F   + +T K+ I+K+   + +I  +  K V+M
Sbjct: 81  FLISQQKTSKLKIYKWNNQILHILWTSYKKVFM 113


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 424 FAFQRLQTLKINIFKFITDVKNIFSSFIKNVYM 326
           F   + +T K+ I+K+   + +I  +  K V+M
Sbjct: 64  FLISQQKTSKLKIYKWNNQILHILWTSYKKVFM 96


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +2

Query: 314 KKKKHVYVFNK*RKNVFNVCNEFE 385
           KKK+ +Y+F+    N+ +V +  +
Sbjct: 246 KKKRKIYLFSGHESNIASVLHALQ 269


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +2

Query: 314 KKKKHVYVFNK*RKNVFNVCNEFE 385
           KKK+ +Y+F+    N+ +V +  +
Sbjct: 261 KKKRKIYLFSGHESNIASVLHALQ 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,778
Number of Sequences: 438
Number of extensions: 1771
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)