Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_G09
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei...    37   0.002
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    29   0.49 
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    28   1.1  
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|...    27   2.6  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   3.4  
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    26   4.5  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    25   6.0  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    25   6.0  
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ...    25   6.0  
SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family...    25   7.9  
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    25   7.9  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   7.9  

>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 16/71 (22%)
 Frame = +1

Query: 10  GGTGFIGKHLGALLSSKGYXIMNVARM---------PASKNISWSTIEA-----SGLP-- 141
           GG+GF+G ++  L  +KGY +++V+R          P   ++ W T++A     S LP  
Sbjct: 7   GGSGFLGHNICKLAIAKGYEVVSVSRRGAGGLHNKEPWMDDVEWETLDAQKDPNSLLPVL 66

Query: 142 KDTSAVVNCAG 174
           +D SAVVN  G
Sbjct: 67  RDASAVVNSVG 77


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 4   IGGGTGFIGKHLGALLSSKGYXIMNVARMPASK 102
           + GG G+IG H   +L  KGY ++ V  +  S+
Sbjct: 11  VTGGAGYIGSHTCVVLLEKGYDVVIVDNLCNSR 43


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 95  PRKIYP--GQQ*RPPAYQKILRLLSIVLDNNSWTLPSP 202
           P  +YP  G+  RPP Y    + LS   D +  +LP P
Sbjct: 275 PEYVYPDFGKMMRPPQYHIAFQALSAFADAHEGSLPRP 312


>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
          family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 4  IGGGTGFIGKHLGALLSSKGYXIMNVAR 87
          + G TGFIG H+   L   GY +    R
Sbjct: 8  VTGVTGFIGAHVAEQLLQAGYRVRGTVR 35


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 114  VNNRGLRLTKRYFGCCQLCWTTIHGLYQ 197
            V +R LRL K+Y     +CW  I  L Q
Sbjct: 1229 VFSRNLRLLKKYLNDVSICWEQIVYLVQ 1256


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 16  TGFIGKHLGALLSSKGYXIMNVARMPAS 99
           T  +G+ +GA L +    +MN+A+ PAS
Sbjct: 288 TALVGELVGARLIAHAGSLMNLAKQPAS 315


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 483 GWYDKEHVFTLFFGFRRTHR 542
           GW+  E+V   F  +RRTH+
Sbjct: 121 GWFVNENVLNEFEAWRRTHK 140


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 163 NCAGQQFMDFTKSWTPGFKQNVQNSRIYTTKALATAINKAQDKPKVFVLVTGVG 324
           N +  + +  + SWTP       +  IY         +K  D PK+ VL+TG G
Sbjct: 240 NPSSTKLLITSTSWTP-------DEDIYILWEALNEYDKTLDTPKLLVLITGKG 286


>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 574 CGXRASIVFH-HLWVLRNPKKRVKTCSLSYHPIYLERLQNE 455
           CG  +  V++ H+ +L+  + +      +Y P+Y+E  +NE
Sbjct: 29  CGTESLAVYNKHVQLLKEAQSKPDFMCNAYMPMYMEATRNE 69


>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
          family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 4  IGGGTGFIGKHLGALLSSKGYXIMNVAR 87
          I G TGF+  H    L S+GY +    R
Sbjct: 7  ITGITGFVASHSAEALLSQGYRVRGTYR 34


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 131 PAYQKILRLLSIVLDNNSWTL 193
           P++Q +   + +V+DN SW L
Sbjct: 16  PSFQNVSNDIPLVIDNGSWQL 36


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 216 EPWCPGLGKVHELLSSTIDNSRSIF 142
           E W   + K+ + + STIDNSR  +
Sbjct: 28  EQWSDQIHKLDKAIRSTIDNSRLFY 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,297,826
Number of Sequences: 5004
Number of extensions: 45968
Number of successful extensions: 153
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)