Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_G09
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1360 + 35942493-35942682,35942799-35942858,35943099-359432... 97 7e-21
01_01_1013 - 8015552-8015613,8016898-8018035 33 0.16
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252... 31 0.66
09_02_0123 + 4537231-4537366,4538088-4538171,4538432-4538586,453... 29 2.0
04_04_1252 + 32093522-32093642,32093912-32094078,32094832-320950... 29 2.0
03_05_1047 + 29935929-29935974,29948868-29949709,29950162-29950350 29 3.5
01_01_1112 + 8808544-8808695,8808818-8808961,8809302-8809380,880... 29 3.5
04_04_1256 + 32124826-32124946,32125388-32125554,32125731-321259... 28 4.6
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230... 28 4.6
04_04_1255 + 32119565-32119685,32120052-32120218,32120332-321205... 28 6.1
01_06_1620 + 38697960-38698131,38698532-38700732 28 6.1
07_03_0409 + 17817046-17817126,17818320-17818523,17818744-178188... 27 8.1
04_03_0927 + 20871487-20871903,20872667-20872812,20873204-208733... 27 8.1
>02_05_1360 +
35942493-35942682,35942799-35942858,35943099-35943217,
35945405-35945449,35945598-35945676,35945777-35945838,
35945932-35946037,35946193-35946253,35947097-35947167,
35947459-35947598,35947887-35947994
Length = 346
Score = 97.5 bits (232), Expect = 7e-21
Identities = 69/205 (33%), Positives = 101/205 (49%), Gaps = 15/205 (7%)
Frame = +1
Query: 4 IGGGTGFIGKHLGALLSSKGYXIMNVAR--------MPASKNISWSTIEASGLPK---DT 150
I G TGF+G+ L L S+ + + + R PAS + E K +
Sbjct: 46 ITGATGFVGRRLVQKLLSEDHKVCVLTRSASKATSVFPASTFPGITIAEQGDWDKCIQGS 105
Query: 151 SAVVNCAGQQFMDFTKSWTPGFKQNVQNSRIYTTKALATAINKAQD--KPKVFVLVTGVG 324
+AVVN AG M + W+P K+ ++ SRI T + IN A +P VFV T +G
Sbjct: 106 TAVVNLAG---MPISTRWSPEIKKEIKESRINVTSKVVNYINNASGDARPSVFVSATAIG 162
Query: 325 AYEPSNVNKYDESSPTTGTDFFSRLVVEWE-KAAQVD-PPVRLVIIRSGAVLGRWGGMIK 498
Y S ++ +DESSP +G D+ + + EWE +A QV+ VRLV++R G VLG+ GG +
Sbjct: 163 FYGTSEISSFDESSP-SGNDYLAEVCREWEARACQVNQEDVRLVLLRIGVVLGKDGGALA 221
Query: 499 NMXXXXXXXXXXXXXDGKQYLPXIH 573
M G+Q+ IH
Sbjct: 222 KMIPLFMMFAGGPLGTGRQWFSWIH 246
>01_01_1013 - 8015552-8015613,8016898-8018035
Length = 399
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 277 KAQDKPKVFVLVTGVGAYEPSNVNKYDESSPTTGTDFFSRLVVEWEKAAQVDPPVR 444
KA P+ V + P NV + S G + ++R V+EW+ A ++PP+R
Sbjct: 309 KATKLPREIPTVAFIHPELPGNVAYFFMRSRLFGVNLYTRKVLEWQFFAMLNPPMR 364
>03_05_0650 -
26423829-26424179,26424379-26424612,26424961-26425236,
26425372-26425648,26425751-26425764,26425843-26425989,
26426306-26426366,26426570-26426604,26426688-26426882,
26428230-26428439,26428865-26428940,26429519-26429799
Length = 718
Score = 31.1 bits (67), Expect = 0.66
Identities = 22/78 (28%), Positives = 37/78 (47%)
Frame = +1
Query: 70 IMNVARMPASKNISWSTIEASGLPKDTSAVVNCAGQQFMDFTKSWTPGFKQNVQNSRIYT 249
+++V+R AS N S T+ G+PK T ++C + F FTK + + ++
Sbjct: 129 LLHVSR--ASTNPSHFTVLVRGVPKSTKESISCTVESF--FTKYHVSSYLSHQIIYKVGK 184
Query: 250 TKALATAINKAQDKPKVF 303
+ + T KA K K F
Sbjct: 185 LQKIVTGAKKAYKKFKHF 202
>09_02_0123 +
4537231-4537366,4538088-4538171,4538432-4538586,
4539115-4539294,4539814-4540169,4540797-4540953
Length = 355
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 4 IGGGTGFIGKHLGALLSSKGYXIMNVARMPASKNIS 111
+GG GFIG + L +GY + AR P+S+ S
Sbjct: 44 VGGAGGFIGSWVVKELLLRGYAVRGTARDPSSQKNS 79
>04_04_1252 +
32093522-32093642,32093912-32094078,32094832-32095050,
32095143-32095302,32095696-32095825,32095998-32096151
Length = 316
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 4 IGGGTGFIGKHLGALLSSKGYXIMNVARMP--ASKNISWSTIEASG 135
+ GG+G+I L +L KGY + R P KN + ++A G
Sbjct: 11 VTGGSGYIASALIKMLLQKGYAVKTTVRNPDDMEKNSHFKELQALG 56
>03_05_1047 + 29935929-29935974,29948868-29949709,29950162-29950350
Length = 358
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 235 SRIYTTKALATAINKAQDKPKVFVLVTGVGAYEPSNVNKYDESSPTTGTD 384
+R+Y TKA+ DK ++FV G + +N+N YD S TD
Sbjct: 315 ARVYPTKAVG-------DKARLFVFNNGESDVKVTNLNAYDMGSAKITTD 357
>01_01_1112 +
8808544-8808695,8808818-8808961,8809302-8809380,
8809477-8809555,8810338-8810377,8810455-8810589,
8810901-8811038,8811596-8811881
Length = 350
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 13 GTGFIGKHLGALLSSKGYXIMNVARMPASK 102
GTGF+G+++ L ++G+ + PA K
Sbjct: 34 GTGFVGRYVSQRLLAQGWRVSGTCTSPAKK 63
>04_04_1256 +
32124826-32124946,32125388-32125554,32125731-32125934,
32126063-32126222,32126379-32126592,32126707-32126854
Length = 337
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 4 IGGGTGFIGKHLGALLSSKGYXIMNVARMP--ASKNISWSTIEASGLPK 144
+ GG G+I L +L KGY + R P KN +EA G K
Sbjct: 11 VTGGNGYIASALIKMLLQKGYAVNTTVRNPDDMRKNSHLKGLEALGTLK 59
>01_06_1556 -
38222071-38222708,38222795-38222822,38222950-38223070,
38223206-38223318,38223424-38223506,38223868-38223930,
38224100-38224254,38224411-38224580,38225101-38225189,
38225304-38225496,38225655-38225779,38226069-38226475,
38226855-38226919,38227414-38227692,38227772-38227845,
38228241-38228292,38228366-38228473,38228871-38228972,
38229100-38229173,38229262-38229435,38229667-38229771,
38229867-38229977,38230364-38230487
Length = 1150
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Frame = -2
Query: 239 REFCTFCLNPGVQDLVKSMNC-------CPAQLTTAEVSFGKPEASIVDQDIFFEAGIRA 81
R F TFCL+P +Q+++ + C PA T ++ K + + + I EA +
Sbjct: 326 RSFHTFCLDPPLQEIIGTWECSWCKSNAAPAVKVTEVLTSKKIQRLVGHRRILQEADFQY 385
Query: 80 TFIIXY 63
F++ +
Sbjct: 386 QFLVKW 391
>04_04_1255 +
32119565-32119685,32120052-32120218,32120332-32120532,
32120700-32120747,32121079-32121238,32121540-32121777,
32121874-32122021
Length = 360
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 4 IGGGTGFIGKHLGALLSSKGYXIMNVARMP--ASKNISWSTIEASG 135
+ GG G+I L +L KGY + R P +KN ++A G
Sbjct: 11 VTGGNGYIASALIKMLLEKGYAVNTTVRNPDDMAKNSHLKDLQALG 56
>01_06_1620 + 38697960-38698131,38698532-38700732
Length = 790
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 175 QQFMDFTKSWTPGFKQNVQNSRIYTTKALATAINKAQDKPKVF 303
Q F DFT +W PG K + +N + K + + ++A P +F
Sbjct: 154 QSFDDFTDTWLPGNKLS-RNKKTGVIKRMISWKDRADPAPGMF 195
>07_03_0409 +
17817046-17817126,17818320-17818523,17818744-17818856,
17819446-17819491,17819741-17819787,17820250-17820325,
17820865-17820937,17821059-17821204,17821382-17821467,
17821734-17821873,17821944-17822083,17822171-17822221,
17823644-17823702,17823793-17823949,17824793-17824845,
17824936-17825034,17825876-17825990,17826075-17826197,
17826417-17826584
Length = 658
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +3
Query: 75 ERSSYASLEKYI--LVNNRGLRLTKRYFGCCQLCWTTIHGLYQVLDTRVQTKCTEFTYLH 248
E YAS+ K I +++ + + C Q C+ G+ +LD ++ C +H
Sbjct: 281 ENPKYASMRKRIGDVIDEDVVHSRAPFVTCTQQCFAIKAGIDGLLDVARRSFCDTSEAIH 340
Query: 249 NQSLGYR 269
N + YR
Sbjct: 341 NLANKYR 347
>04_03_0927 +
20871487-20871903,20872667-20872812,20873204-20873301,
20873378-20873572,20873670-20873797,20873892-20874050,
20875119-20875223,20875449-20875559,20875653-20875790,
20875909-20876091,20876362-20876517,20876615-20876738,
20876820-20877030,20877614-20877729,20877828-20878053,
20878218-20878311,20879198-20879275,20879822-20879971,
20880086-20880292,20880584-20880788,20880990-20881096
Length = 1117
Score = 27.5 bits (58), Expect = 8.1
Identities = 24/70 (34%), Positives = 29/70 (41%)
Frame = +1
Query: 253 KALATAINKAQDKPKVFVLVTGVGAYEPSNVNKYDESSPTTGTDFFSRLVVEWEKAAQVD 432
KA A A KA V L GV +P + D S TD V EKA +D
Sbjct: 159 KAAAAATRKALTN--VQTLPRGVEVLDPLGLGVIDNKSLRLITDASVSSPVSREKAQGLD 216
Query: 433 PPVRLVIIRS 462
P +R +I S
Sbjct: 217 PSMREKVIYS 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.133 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,691,818
Number of Sequences: 37544
Number of extensions: 291057
Number of successful extensions: 822
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -