Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_G09
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   1.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   1.6  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   2.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.7  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   8.7  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 127 PLLLTRIYFSRLAYELRSLXHILLMKAVRLNV 32
           PL+   +++SRL   +R+   +L  +A ++NV
Sbjct: 232 PLIFIILFYSRLLSSIRNHEKMLREQAKKMNV 263


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 127 PLLLTRIYFSRLAYELRSLXHILLMKAVRLNV 32
           PL+   +++SRL   +R+   +L  +A ++NV
Sbjct: 232 PLIFIILFYSRLLSSIRNHEKMLREQAKKMNV 263


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 328 YEPSNVNKYDESSPTTGTDFFSRLVVEWEKAAQVDPPVR 444
           Y P+ V K  +      +D +S+L   W K   +D  VR
Sbjct: 7   YRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVR 45


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -2

Query: 179 CCPAQLTTAEVSFGKPEASIVDQ 111
           C P Q T +++ + KP+ ++V++
Sbjct: 25  CQPTQRTMSKIQWRKPKPAMVEE 47


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 535 VLRNPKKRVKTCSLSYHP 482
           ++R  + + KTC   YHP
Sbjct: 377 LMRTVRGKEKTCYYPYHP 394


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 535 VLRNPKKRVKTCSLSYHP 482
           ++R  + + KTC   YHP
Sbjct: 377 LMRTVRGKEKTCYYPYHP 394


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 137 YQKILRLLSIVLDNNSWTLPSPGHQGSNK 223
           YQ+ LRLL +   N  W   S G   S++
Sbjct: 171 YQQYLRLLEVPQINLEWGEGSSGDDLSSE 199


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 70  IMNVARMPASKNISWSTIEAS 132
           +MNV R P     +W  ++A+
Sbjct: 211 LMNVERFPYQPPFAWKILKAA 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,613
Number of Sequences: 438
Number of extensions: 2925
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)