Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_G08
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1448 - 27168389-27172021                                         29   5.9  
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257...    28   7.8  

>08_02_1448 - 27168389-27172021
          Length = 1210

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 297 ILSMILPHGHLTIDKLHGQSGQR-PKFQR 214
           +L  + PHG L I +LHG SG + P++ R
Sbjct: 767 VLESLTPHGKLKILELHGYSGLKIPQWMR 795


>08_02_1277 + 25823835-25825113,25825201-25825418,25825501-25825724,
            25826468-25827080,25827735-25827775,25830549-25831191,
            25832595-25834012,25834110-25834251,25834415-25834522,
            25835346-25835558,25835643-25835753,25836099-25836293,
            25836555-25836695,25836835-25836909
          Length = 1806

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +1

Query: 61   QKIRPQV*SEEVYLSIASYK*HTLRDVYSPNERNDQVSFQCTT--CIAFSTLQSLKFR 228
            Q + P V +   Y +   ++  T   V+SP  RND V FQ  +    A+S +Q  + R
Sbjct: 1386 QGMTPYVGAPMTYPTSPVFQGQTFTGVFSPGRRNDSVRFQTPSRNMTAYSGVQGQRER 1443


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,897,666
Number of Sequences: 37544
Number of extensions: 316799
Number of successful extensions: 713
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)