Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_G04
         (816 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    27   0.18 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   3.8  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   5.1  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    22   5.1  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   8.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
 Frame = +3

Query: 525  ILYSTN---LRPKFQFRKNIDSAFLHNGITSGL----RSLSVDFILPCSESYVYITDDTT 683
            IL++ N   L PK   R  I    L NG+ SGL       S   +  C  +  + +DDT+
Sbjct: 828  ILWNINNKRLEPKGDNRYTIREEILANGVLSGLSIKRTERSDSALFTCVATNAFGSDDTS 887

Query: 684  GDLIVFSLQDLRF-TKISRASNTADSWEFIVP 776
             ++IV  + ++ +  K+   S  +    ++ P
Sbjct: 888  INMIVQEVPEVPYGLKVLDKSGRSVQLSWVAP 919


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 300 SIPRTRPGIPFTVNFIDRFL 359
           S+  TRP +P+  N+I+ +L
Sbjct: 28  SLSDTRPMLPYPQNYINSYL 47


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 537 YCKVSMMLVVLAFAHLGYRG 478
           YC ++    VL   H+GY G
Sbjct: 475 YCNIAFGDAVLYTIHMGYHG 494


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +1

Query: 319 LEYHLLSTLLIGFLMKKYQC*DHFLIQTKVKNLHRFLTCLKTAVLDFGLLIQDTSISQVC 498
           ++  + S  L GF++  Y   D   I++K + +HR L   K    D    +     S  C
Sbjct: 132 IDIEIYSQFLYGFMI--YLILD--TIKSKYRQMHRLLANYKVITSDEFFYLVSKIESLAC 187

Query: 499 ESK 507
           E K
Sbjct: 188 ELK 190


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 310 ELDLEYHLLSTLLIGFLMKKYQC 378
           ELDL ++ +S+L  G  + +++C
Sbjct: 373 ELDLSWNSISSLSHGGQLARFKC 395


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,583
Number of Sequences: 336
Number of extensions: 3817
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)