Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_G04
(816 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 27 2.4
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 3.2
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 27 3.2
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 27 3.2
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 27 4.2
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 26 7.4
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 7.4
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 7.4
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 26 7.4
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc... 25 9.7
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 25 9.7
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 25 9.7
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.7
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ... 25 9.7
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2
Query: 491 WDIEVSCINKPKSRTAVFKHVKNRCK 414
WD VS I++PKS H N K
Sbjct: 438 WDFSVSAIHRPKSAVYYVNHHSNNSK 463
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 378 LRPFPNSNEGKEFTSVFNMFEDSCSR 455
L P NS+E +E SVFN+ + CS+
Sbjct: 1311 LWPLRNSSEKEEVCSVFNISKSVCSK 1336
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 27.1 bits (57), Expect = 3.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 141 DIDGVKYTNDSDYEY 185
D+D KY++DSDY Y
Sbjct: 237 DVDSSKYSHDSDYSY 251
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 655 DSEHGNIKSTDRDRSPLVIP 596
DS +GNIK++ D P+V+P
Sbjct: 73 DSHYGNIKASVNDIEPIVLP 92
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 285 PRITISIPRTRPGIPFTVNFIDRFLDEEVPMLRPFPNSNEGKEFTSVFNM 434
P++ I I R R + +++DE P + + E ++ TS+FN+
Sbjct: 377 PKLIIDIQRERQKAAYAE--FKKYIDENGPKMLEEEKAREAEQKTSIFNL 424
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 135 SYDIDGVKYTNDSDYEYKDGAFTFRNVALEEHEKFLIRQNLIPYDFIYDVP 287
S D+ +T S ++ K F+ N A + FL+ P DF+YD P
Sbjct: 175 SPDMPSDSFTG-SLHDIKASPFSSNNYAQSLLDYFLLPNTTQPPDFVYDRP 224
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 240 LIRQNLIPYDFIYDVPRITISIPRTRP 320
L Q L P D DVP + ++P +RP
Sbjct: 624 LSSQGLTPEDLTEDVPFLHFNVPSSRP 650
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -2
Query: 773 HNKFPRISRITCAADFRKTQ--VLKRED 696
H FP S TC D +K + V KR D
Sbjct: 203 HELFPNASEFTCVRDLKKLEKKVKKRSD 230
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -3
Query: 466 TNQSLEQLSSNMLKTDVNSLPSFELGNGLSIGTSSSRNLSIKL 338
+N+ +E++ +K D N S + LSI + +S L+ +L
Sbjct: 19 SNEEIERIRKRFIKIDANQSGSIDRNEFLSIPSVASNPLASRL 61
>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 675 DTTGDLIVFSLQDLRFTKISRASN--TADSWEFIVPQFETQYRLXVE 809
+TTG+L+ F++ + KI RAS+ + D + Q + + RL VE
Sbjct: 90 ETTGNLMAFNVYETANIKIDRASSSVSGDDDLDVTIQVKEKPRLYVE 136
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +3
Query: 129 LFSYDIDGVKYTNDSDYEYKDGAFTFRNVALEEHEKFLIRQNLIP 263
+FS D D ++ Y + +G+ RNV ++ + +++QN+ P
Sbjct: 487 VFSMDQD-IRKDLQEVYSHPEGSAGSRNVYIKRRNQRVLKQNMTP 530
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -3
Query: 790 CVSNCGTINSQESAVLLARLIFVKRKS*SEKTMRSPVVSSVMYT*DSE 647
C+ G +NS AV L LI++K K + S V+Y+ S+
Sbjct: 828 CMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ 875
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 9.7
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 475 PVSTNQSLEQLSSNMLKTDVNSLPSF-ELGNGLSIGTSSSRNLSIKLTVNGIPG 317
P +T ++ S+N +T +S S + N +GT LSIKL+ G G
Sbjct: 96 PSNTGANITTNSNNNAQTISSSSQSVGHIDNPSGLGTHGKVRLSIKLSTGGSGG 149
>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 539
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +3
Query: 99 RNFTHEHSWS----LFSYDIDGVKYTNDSDYEYKDGAFTFRNVALEEHEKFLI 245
R+F H + S L YD V++ + Y +GA+ FR+ + H K L+
Sbjct: 51 RHFKHSNFASFVRQLNKYDFHKVRHEEGAPSIYGEGAWEFRHDDFQLHHKDLL 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,196,680
Number of Sequences: 5004
Number of extensions: 67085
Number of successful extensions: 211
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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