Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_G04
         (816 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1007 - 29637911-29638333,29640095-29640282,29640688-296407...    29   4.4  
02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,362...    29   5.8  
11_06_0437 - 23533218-23536382                                         28   7.7  
02_05_0746 - 31451303-31453168,31453243-31453357,31454296-314543...    28   7.7  

>03_05_1007 -
           29637911-29638333,29640095-29640282,29640688-29640773,
           29641108-29641173,29641289-29641331,29641398-29642328
          Length = 578

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +3

Query: 174 DYEYKDGAFTFRNVALEEHEKFLIRQNLIPYDFIYDVPRITISIPRTRPGIPFTVNFID 350
           D +  DG F+FR++ L +HEK  +R + I +  +  +P IT+   R      F V   D
Sbjct: 301 DDDDSDGPFSFRHMYLFDHEK--LRFSAINFSGMTLMPWITVETRRDLGETAFLVPVFD 357


>02_01_0500 -
           3623837-3624019,3624591-3624778,3625209-3626147,
           3626311-3626479,3626701-3626871,3626948-3627016,
           3627094-3627201,3627844-3627997,3628659-3628738,
           3628822-3628914,3628951-3629073,3629165-3629915,
           3630123-3630163,3630338-3630385
          Length = 1038

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 132 FSYDIDGVKYTNDSDYEY--KDGAFTFRNVALEEHEK 236
           +  D D  +Y+ DSDYE   +DG++  R++   EHE+
Sbjct: 172 YERDRDYDRYSYDSDYEKSRRDGSWRRRDLCESEHER 208


>11_06_0437 - 23533218-23536382
          Length = 1054

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +3

Query: 603 TSGLRSLSVDFILPCSESYVYITDDTTGDLIVFSLQDLRFTKIS 734
           +S  R L    +L  ++SYV    D+ GDLI   L DL  T IS
Sbjct: 588 SSLFRRLKYLRVLDLTKSYVQSIPDSIGDLIHLRLLDLDSTDIS 631


>02_05_0746 -
           31451303-31453168,31453243-31453357,31454296-31454351,
           31455057-31455138,31455484-31455517,31455912-31456016,
           31456108-31456387
          Length = 845

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 258 IPYDFIYDVPRITISIPRTRPGIPFTVNFIDRFLDEEVPMLRP 386
           +P  ++  +  I  S+ +TRP     V+ +D  +D  + +LRP
Sbjct: 229 VPIGYLKTIEDILSSVTKTRPQWTRLVSAVDHRVDRSLALLRP 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,810,396
Number of Sequences: 37544
Number of extensions: 362724
Number of successful extensions: 930
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)