Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_G03
         (841 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   3.0  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   7.0  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   7.0  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   7.0  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   7.0  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   7.0  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    22   7.0  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   7.0  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 520 PGPSKGNPSPWLPEAK*TCMSALP 449
           P PS  +P P LP A   C + LP
Sbjct: 153 PNPSIIDPGPALPPAGFLCNNYLP 176


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 740 LVNGQLIIWIHNRRFDVRM*HAQRVSDLVDGH 645
           L   Q+ IW  NRR   +  H     ++V  H
Sbjct: 259 LTERQIKIWFQNRRMKWKKEHKMASMNIVPYH 290


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 740 LVNGQLIIWIHNRRFDVRM*HAQRVSDLVDGH 645
           L   Q+ IW  NRR   +  H     ++V  H
Sbjct: 259 LTERQIKIWFQNRRMKWKKEHKMASMNIVPYH 290


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 740 LVNGQLIIWIHNRRFDVRM*HAQRVSDLVDGH 645
           L   Q+ IW  NRR   +  H     ++V  H
Sbjct: 259 LTERQIKIWFQNRRMKWKKEHKMASMNIVPYH 290


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 740 LVNGQLIIWIHNRRFDVRM*HAQRVSDLVDGH 645
           L   Q+ IW  NRR   +  H     ++V  H
Sbjct: 215 LTERQIKIWFQNRRMKWKKEHKMASMNIVPYH 246


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 740 LVNGQLIIWIHNRRFDVRM*HAQRVSDLVDGH 645
           L   Q+ IW  NRR   +  H     ++V  H
Sbjct: 259 LTERQIKIWFQNRRMKWKKEHKMASMNIVPYH 290


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 740 LVNGQLIIWIHNRRFDVRM*HAQRVSDLVDGH 645
           L   Q+ IW  NRR   +  H     ++V  H
Sbjct: 47  LTERQIKIWFQNRRMKWKKEHKMASMNIVPYH 78


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 740 LVNGQLIIWIHNRRFDVRM*HAQRVSDLVDGH 645
           L   Q+ IW  NRR   +  H     ++V  H
Sbjct: 259 LTERQIKIWFQNRRMKWKKEHKMASMNIVPYH 290


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,344
Number of Sequences: 336
Number of extensions: 4601
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23140487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)