Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_G03
(841 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0697 - 30999644-31000762 113 1e-25
06_01_0940 + 7235801-7236916 107 8e-24
10_08_0900 - 21436508-21437521 101 5e-22
10_08_0901 - 21443224-21444085,21444804-21444998,21445189-214452... 96 4e-20
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 31 0.86
12_02_1061 - 25756366-25757567,25758692-25758797 29 3.5
12_02_0931 + 24512496-24512567,24512705-24512806,24512939-245129... 29 6.1
03_02_0018 - 5016752-5017288 29 6.1
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 28 8.1
04_04_1242 - 32016553-32016857,32017628-32017784,32017871-320180... 28 8.1
12_02_0904 - 24181766-24181809,24181888-24182066,24182424-241824... 23 9.8
>02_05_0697 - 30999644-31000762
Length = 372
Score = 113 bits (273), Expect = 1e-25
Identities = 86/256 (33%), Positives = 116/256 (45%), Gaps = 22/256 (8%)
Frame = +3
Query: 78 NFLLQYGYLSKXLAGVGYTYT-SQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGL 254
++L +GYL + Y+ S+ A+ Q GL TG LD T RCG+
Sbjct: 67 DYLSHFGYLPPPPSSSPYSDAFDDSLEAAIAAYQRNFGLNATGELDTDTVDQMVAPRCGV 126
Query: 255 KDI-------DEDSHA---RNRR-YIIQEG---WN--KREVTYRLLNGSST-MSKDRIER 383
D+ D +S A R R Y G W +R + Y + S+T + + +
Sbjct: 127 ADVINGTSTMDRNSSAAALRGRHLYSYFPGGPMWPPFRRNLRYAITATSATSIDRATLSA 186
Query: 384 LLENGLEVWAPHGNLHFTKLDEGK-ADIQVYFASGNHGDGFPFDGPGRVVAHAFPPPLGD 560
+ WA L FT++ ADI + F SG+HGDG FDGP +AHAF P G
Sbjct: 187 VFARAFSRWAAATRLQFTEVSSASNADITIGFYSGDHGDGEAFDGPLGTLAHAFSPTDGR 246
Query: 561 IHFDDDETW-GVXXXXXXXXXXXXXXFFAVAVHEIGHSLGMSHSNVKSSVMYPYYQLPVD 737
H D E W +VAVHEIGH LG+ HS+V S+MYP +
Sbjct: 247 FHLDAAEAWVASGDVSTSSSFGTAVDLESVAVHEIGHLLGLGHSSVPDSIMYPTIRTGTR 306
Query: 738 K--LHVDDILGMQELY 779
K L DD+LG+Q LY
Sbjct: 307 KVDLESDDVLGIQSLY 322
>06_01_0940 + 7235801-7236916
Length = 371
Score = 107 bits (258), Expect = 8e-24
Identities = 80/255 (31%), Positives = 113/255 (44%), Gaps = 21/255 (8%)
Frame = +3
Query: 78 NFLLQYGYLS----KXLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKR 245
++L +GYLS L+ + A+K Q GL TG LD T R
Sbjct: 67 DYLWHFGYLSYPSSSSLSPSFNDLFDADMELAIKMYQGNFGLDVTGDLDAATVSQMMAPR 126
Query: 246 CGLKDIDEDSHA-------RNRR-YIIQEG---WNKREVTYRL-LNGSSTMSKDR--IER 383
CG+ D+ + R R Y G W + T R + +S S DR + +
Sbjct: 127 CGVADVVNGTSTMGGGGGVRGRGLYSYFPGSPRWPRSRTTLRYAITATSQTSIDRATLSK 186
Query: 384 LLENGLEVWAPHGNLHFTKL-DEGKADIQVYFASGNHGDGFPFDGPGRVVAHAFPPPLGD 560
+ + W+ L+FT+ ADI + F G+HGDG FDGP +AHAF P G
Sbjct: 187 VFASAFARWSAATTLNFTEAASAADADITIGFYGGDHGDGEAFDGPLGTLAHAFSPTNGR 246
Query: 561 IHFDDDETWGVXXXXXXXXXXXXXXFFAVAVHEIGHSLGMSHSNVKSSVMYPYYQLPVDK 740
+H D E W +VAVHEIGH LG+ HS+ S+M+P K
Sbjct: 247 LHLDASEAWVAGGDVTRASSNAAVDLESVAVHEIGHILGLGHSSAADSIMFPTLTSRTKK 306
Query: 741 LHV--DDILGMQELY 779
+++ DD+ G+Q LY
Sbjct: 307 VNLATDDVAGIQGLY 321
>10_08_0900 - 21436508-21437521
Length = 337
Score = 101 bits (243), Expect = 5e-22
Identities = 80/257 (31%), Positives = 122/257 (47%), Gaps = 24/257 (9%)
Frame = +3
Query: 81 FLLQYGYLSKXLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLKD 260
+L ++GY++K + + + AV++ Q LP TG LD T RCG+ D
Sbjct: 42 YLARFGYMAKPGRDTTDAF-DEHLEVAVRRYQTRFSLPVTGRLDNATLDQIMSPRCGVGD 100
Query: 261 IDED---SHARN--------RRYIIQEG---WNKRE----VTYRLLNGSST--MSKDRIE 380
D + S A + R+ +G W + + ++Y + ++ + +
Sbjct: 101 DDVERPVSVALSPGAQGGVVSRFTFFKGEPRWTRSDPPIVLSYAVSPTATVGYLPPAAVR 160
Query: 381 RLLENGLEVWAPHGNLHFTKLDEGKA-DIQVYFASGNHGDGFPFDGPGRVVAHAFPPPLG 557
+ + WA + F + D+ +A DI+V F +GNHGDG PFDGP ++ HAF P G
Sbjct: 161 AVFQRAFARWARTIPVGFVETDDYEAADIKVGFYAGNHGDGVPFDGPLGILGHAFSPKNG 220
Query: 558 DIHFDDDETWGVXXXXXXXXXXXXXXFFAVAVHEIGHSLGMSHSNVKSSVMYPYYQLPVD 737
+H D E W V +VA HEIGH LG+ HS +VMYP + P +
Sbjct: 221 RLHLDASEHWAVDFDVDATASAIDLE--SVATHEIGHVLGLGHSASPRAVMYPSIK-PRE 277
Query: 738 K---LHVDDILGMQELY 779
K L VDD+ G+Q LY
Sbjct: 278 KKVRLTVDDVEGVQALY 294
>10_08_0901 -
21443224-21444085,21444804-21444998,21445189-21445259,
21446293-21447094,21447687-21447723,21448270-21449023
Length = 906
Score = 95.9 bits (228), Expect = 4e-20
Identities = 54/112 (48%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Frame = +3
Query: 453 KADIQV-YFASGNHGDGFPFDGPGRVVAHAFPPPLGDIHFDDDETWGVXXXXXXXXXXXX 629
+ADI+V ++ +G HGDG PFDGP V AHA P G I FD E W V
Sbjct: 116 EADIRVGFYGAGEHGDGHPFDGPLNVYAHATGPEDGRIDFDAAERWAVDLAADASPAAVD 175
Query: 630 XXFFAVAVHEIGHSLGMSHSNVKSSVMYPYYQLPVDK--LHVDDILGMQELY 779
VA HEIGH+LG+ HS +SSVMYPY K L VDD+ G+QELY
Sbjct: 176 LE--TVATHEIGHALGLDHSTSESSVMYPYVGTRERKVRLTVDDVEGIQELY 225
Score = 69.7 bits (163), Expect = 3e-12
Identities = 57/169 (33%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Frame = +3
Query: 312 WNKREV--TYRL--LNGSSTMSKDRIERLLENGLEVWAPHGNLHFTKLDE-GKADIQVYF 476
WN+ ++ TY + L + + +D + + L WA L F + +ADI+V F
Sbjct: 679 WNRPDMRLTYAVSPLATADHLPRDAVREAFRSALARWAEVTPLRFAEAARYEEADIRVGF 738
Query: 477 ----ASGN-HGDGFPFDGPGR-VVAHAFPPPLGDIHFDDDETWGVXXXXXXXXXXXXXX- 635
A G G G G +AHA PP G IH W V
Sbjct: 739 YLHTADGKCDACGCVCKGGGEEALAHAHPPQDGRIHLHAARKWAVTNVAGAGGDAPPLAV 798
Query: 636 -FFAVAVHEIGHSLGMSHSNVKSSVMYPYYQLPVDKLHVDDILGMQELY 779
+VAVHEIGH+LG+ HS+ +SS+MY +Y+ V L DD+ G+QELY
Sbjct: 799 DLESVAVHEIGHALGLGHSSSESSMMYRHYRGKV-SLTDDDVKGVQELY 846
Score = 55.6 bits (128), Expect = 5e-08
Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = +3
Query: 525 VVAHA-FPPPLGDIHFDDDETWGVXXXXXXXXXXXXXXFFAVAVHEIGHSLGMSHSNVKS 701
V+AH+ P G IH W V +VA HEIGH LG+ HS+ +S
Sbjct: 400 VLAHSSMPEKSGQIHLHAAHRWTVNLAADTAPLAVDLE--SVAAHEIGHVLGLDHSSSRS 457
Query: 702 SVMYPYYQLPVDK--LHVDDILGMQELY 779
S+MYP+ K L DD+ G+QELY
Sbjct: 458 SMMYPFISCRERKVRLTTDDVHGIQELY 485
>02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 31.5 bits (68), Expect = 0.86
Identities = 31/120 (25%), Positives = 54/120 (45%)
Frame = +3
Query: 84 LLQYGYLSKXLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLKDI 263
L+ + + +A VG + S+ E +QA AG G L +L + C L+++
Sbjct: 876 LIDHEEVHSAIASVG---SLTSLQELTFNVQA-AGNFSIGQLS-SMNELVTLRICQLENV 930
Query: 264 DEDSHARNRRYIIQEGWNKREVTYRLLNGSSTMSKDRIERLLENGLEVWAPHGNLHFTKL 443
+ A++ R+I +E T+ N S S+ E+ ++ LE PH NL +L
Sbjct: 931 KSEEEAKSARFIDKEHLEALSFTW---NDLSMTSEPTAEKTTDDVLEGLEPHHNLKHLQL 987
>12_02_1061 - 25756366-25757567,25758692-25758797
Length = 435
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 467 SLFRFRQPWRRVPLRWPWSSSGPRVSTAT 553
S+ RF P +P+R P ++ GP VSTA+
Sbjct: 396 SVLRFEAPLPSLPVRMPVATYGPPVSTAS 424
>12_02_0931 +
24512496-24512567,24512705-24512806,24512939-24512984,
24513292-24513355,24513997-24514348,24514497-24514749,
24515069-24515311,24515399-24515518,24515710-24516158
Length = 566
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 276 HARNR--RYIIQEGWNKREVTYRLLNGSSTMSKDRIERLLENGLEVWAPHGNLHF 434
H RN + +++EG N + S KD IE LENG+ W + +H+
Sbjct: 107 HGRNLFLQSLVEEGQNPSTSNGGSNSQKSVEYKDLIE-CLENGINFWTDYSKVHY 160
>03_02_0018 - 5016752-5017288
Length = 178
Score = 28.7 bits (61), Expect = 6.1
Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Frame = -2
Query: 561 YRRVAVETRGPLLDQGHRRGTRLHGCRKRNKLVCPLCLHLVS-------*SGGSRGAPIP 403
YRR+ GP LD+ R G + R +L L L L S GG GA
Sbjct: 103 YRRLYRLCLGPALDRLGRGGGAIAHAHARARLSLSLSLSLFSIDCYERLGGGGGAGAGRQ 162
Query: 402 PNHSLEAFLCDP 367
P S FLC P
Sbjct: 163 PQPSSLLFLCKP 174
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 429 GGSRGAPIPPNHSLEAFLCDPCSLYLNHSGVCK 331
GGS+GA PP + + CD CS+ + G+ +
Sbjct: 96 GGSKGAA-PPARDIRRYKCDFCSVVRSKKGLIR 127
>04_04_1242 - 32016553-32016857,32017628-32017784,32017871-32018089,
32018184-32018470,32018629-32019934,32020021-32020178,
32020250-32020335,32023106-32023173,32023297-32023340,
32023418-32023490,32023605-32023684,32023774-32023867,
32023981-32024151,32024463-32024557,32025049-32025128,
32025137-32025333,32025896-32026183
Length = 1235
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 371 SHRKASRE-WFGGMGAPREPPLHET 442
S RK SR+ FG +G PR P LH T
Sbjct: 1144 SPRKLSRQNSFGSIGTPRTPNLHST 1168
>12_02_0904 -
24181766-24181809,24181888-24182066,24182424-24182464,
24182829-24182860,24183816-24184140
Length = 206
Score = 23.4 bits (48), Expect(2) = 9.8
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -2
Query: 360 LYLNHSGVCK*PRVYSILLV*YICDFLRASLHLYLSNR 247
+YL G+C + + +V +C F+ + Y+SN+
Sbjct: 142 IYLLDKGICMTNPPHLLTVVKKVCSFITWDGYQYMSNQ 179
Score = 23.0 bits (47), Expect(2) = 9.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 510 RRGTRLHGCRKRNKLVCPLC 451
RRG LHG R+R+ P C
Sbjct: 83 RRGGALHGVRRRDGGEAPGC 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,509,030
Number of Sequences: 37544
Number of extensions: 496375
Number of successful extensions: 1356
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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