Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_G03
         (841 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   3.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   3.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   4.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   4.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   6.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.1  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   8.1  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = -2

Query: 462 CPLCLHLVS*SGGSRG-APIPPNHSLEA--FLCDPC 364
           C   L   S SG ++  AP PPNH L     LC  C
Sbjct: 78  CHSNLLSTSPSGQNKAVAPYPPNHPLSGSKHLCSIC 113


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = -2

Query: 462 CPLCLHLVS*SGGSRG-APIPPNHSLEA--FLCDPC 364
           C   L   S SG ++  AP PPNH L     LC  C
Sbjct: 78  CHSNLLSTSPSGQNKAVAPYPPNHPLSGSKHLCSIC 113


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 694 SNLLLCIHIISCPLTSYTWTTYWACKS 774
           S  L+ I+I  C L   +W ++W  +S
Sbjct: 242 SYYLIQIYIPCCMLVIVSWVSFWLDQS 268


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 694 SNLLLCIHIISCPLTSYTWTTYWACKS 774
           S  L+ I+I  C L   +W ++W  +S
Sbjct: 242 SYYLIQIYIPCCMLVIVSWVSFWLDQS 268


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
 Frame = +3

Query: 114 LAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRC---GLKDIDED 272
           L     T T  +   AV           TG   +PT++L KR++    G  D D+D
Sbjct: 228 LPAASATGTGPATPSAVVATSNATAAMTTGTTTIPTRRLRKRRQNDGEGADDRDDD 283



 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +1

Query: 124 LATLTRHNLFPKLSRKCRPSQGYHKQ 201
           L     H L+P  S  C P  G  +Q
Sbjct: 63  LTAQAHHRLYPAFSSSCDPVPGNLEQ 88


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 732 VDKLHVDDILGMQELYCEFMVW 797
           +DK+H+DD +G    +    +W
Sbjct: 329 LDKMHIDDPVGASATHGASGIW 350


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 178 ACIFLTASEIDC 143
           AC+ L AS IDC
Sbjct: 10  ACLLLAASPIDC 21


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 740 LVNGQLIIWIHNRRFDVRM*HAQRVSDLVDGH 645
           L   Q+ IW  NRR   +  H     ++V  H
Sbjct: 47  LTERQIKIWFQNRRMKWKKEHKMASMNIVPYH 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,135
Number of Sequences: 438
Number of extensions: 5528
Number of successful extensions: 47
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)