Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_G01
         (546 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF052384-1|AAC78786.1|  146|Homo sapiens IgM heavy chain variabl...    30   4.6  
CR457260-1|CAG33541.1|  247|Homo sapiens FLJ10525 protein.             30   6.1  
BC000948-1|AAH00948.2|  247|Homo sapiens transmembrane protein 3...    30   6.1  
AY659966-1|AAV70491.1|  247|Homo sapiens SHINC3 protein.               30   6.1  
AK023062-1|BAB14384.1|  247|Homo sapiens protein ( Homo sapiens ...    30   6.1  
AK001387-1|BAA91665.1|  247|Homo sapiens protein ( Homo sapiens ...    30   6.1  

>AF052384-1|AAC78786.1|  146|Homo sapiens IgM heavy chain variable
           region protein.
          Length = 146

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 24/78 (30%), Positives = 38/78 (48%)
 Frame = +1

Query: 232 VKEVFFSDPGQQLIMGIIARDLDHSDAEASITAGGIGFSYANIKLKSPRGSGLNYQLEIY 411
           + +V   + G  L+       L  S +  SI++G   +S+    L+ P G GL Y  +IY
Sbjct: 18  LSQVQLHESGPGLVKPSETLSLTCSVSGDSISSGSYYWSW----LRQPAGKGLEYIGQIY 73

Query: 412 T*KSYTLDHSFQSRSFLS 465
           T  S T + S +SR  +S
Sbjct: 74  TSGSTTYNPSLKSRVTIS 91


>CR457260-1|CAG33541.1|  247|Homo sapiens FLJ10525 protein.
          Length = 247

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -1

Query: 207 IFGFFLPQKPLIKTSTYYKIFTLYNTDQR*KYENQNGSELHFVVVFLKRLPQCVMCHVRR 28
           +F  F  Q  L++   YY+  TL  + +R  Y     +EL  VV  +   P C +  VRR
Sbjct: 172 VFMLFSGQGSLLQPFIYYRFLTLRYSSRRNPYCRTLFNELRIVVEHIIMKPACPL-FVRR 230

Query: 27  L 25
           L
Sbjct: 231 L 231


>BC000948-1|AAH00948.2|  247|Homo sapiens transmembrane protein 33
           protein.
          Length = 247

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -1

Query: 207 IFGFFLPQKPLIKTSTYYKIFTLYNTDQR*KYENQNGSELHFVVVFLKRLPQCVMCHVRR 28
           +F  F  Q  L++   YY+  TL  + +R  Y     +EL  VV  +   P C +  VRR
Sbjct: 172 VFMLFSGQGSLLQPFIYYRFLTLRYSSRRNPYCRTLFNELRIVVEHIIMKPACPL-FVRR 230

Query: 27  L 25
           L
Sbjct: 231 L 231


>AY659966-1|AAV70491.1|  247|Homo sapiens SHINC3 protein.
          Length = 247

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -1

Query: 207 IFGFFLPQKPLIKTSTYYKIFTLYNTDQR*KYENQNGSELHFVVVFLKRLPQCVMCHVRR 28
           +F  F  Q  L++   YY+  TL  + +R  Y     +EL  VV  +   P C +  VRR
Sbjct: 172 VFMLFSGQGSLLQPFIYYRFLTLRYSSRRNPYCRTLFNELRIVVEHIIMKPACPL-FVRR 230

Query: 27  L 25
           L
Sbjct: 231 L 231


>AK023062-1|BAB14384.1|  247|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13000 fis, clone NT2RP3000333, highly similar to
           Rattus norvegicus db83 mRNA. ).
          Length = 247

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -1

Query: 207 IFGFFLPQKPLIKTSTYYKIFTLYNTDQR*KYENQNGSELHFVVVFLKRLPQCVMCHVRR 28
           +F  F  Q  L++   YY+  TL  + +R  Y     +EL  VV  +   P C +  VRR
Sbjct: 172 VFMLFSGQGSLLQPFIYYRFLTLRYSSRRNPYCRTLFNELRIVVEHIIMKPACPL-FVRR 230

Query: 27  L 25
           L
Sbjct: 231 L 231


>AK001387-1|BAA91665.1|  247|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10525 fis, clone NT2RP2000892. ).
          Length = 247

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -1

Query: 207 IFGFFLPQKPLIKTSTYYKIFTLYNTDQR*KYENQNGSELHFVVVFLKRLPQCVMCHVRR 28
           +F  F  Q  L++   YY+  TL  + +R  Y     +EL  VV  +   P C +  VRR
Sbjct: 172 VFMLFSGQGSLLQPFIYYRFLTLRYSSRRNPYCRTLFNELRIVVEHIIMKPACPL-FVRR 230

Query: 27  L 25
           L
Sbjct: 231 L 231


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,233,029
Number of Sequences: 237096
Number of extensions: 1717215
Number of successful extensions: 3552
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3552
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)