Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_F24
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   2.1  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    26   3.6  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    26   3.6  
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    26   4.8  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   6.3  

>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 111 KMAVNSATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGGYLG--SLMFMFFVTAV 278
           +M +NS +     S LT+ + +G+  Y     LS   +I  GYL   S+ F+  V +V
Sbjct: 323 QMRINSPSHVQRLSFLTIAMQAGLDAYIAIFFLSTNAVIEKGYLPFVSVAFLSLVPSV 380


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 240 LGSLMFMFFVTAVGNLETILFGKAFQLKLPEVVL-SMGISLIAAGMVHRICFTTCLIF 410
           L  L F  F   V  + ++L G    + LP ++L ++ I  +AA +     FTTCLI+
Sbjct: 131 LTGLCFATFSYEVSPVVSVLSG-VLLISLPTLILLNLCILKLAAKLHLSALFTTCLIY 187


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 322 FNWNALPNRIVSRLPTAVTK 263
           FNW++L + ++ R+P A TK
Sbjct: 11  FNWSSLSSILLPRIPLATTK 30


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 13  ELHLKS*AGISLSSRLNSVKIQVGTNYSK*NTAK 114
           +LH+K   G+S+SS  N + + V  NY    TAK
Sbjct: 59  KLHVKH-KGMSISSSRNELVVTVSGNYKNVYTAK 91


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +2

Query: 308 SIPIEITRSSTIDGNIIDCCWHGPQDLFHHMPHFLRDNHLL 430
           S+PI  + S T    I+  C HG       +PH+++   ++
Sbjct: 113 SLPIVGSISETSVSGIMSTCTHGSSLQHQVLPHYIKSMRIM 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,558
Number of Sequences: 5004
Number of extensions: 48682
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)