Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_F23
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    62   3e-12
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   2.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.6  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 62.1 bits (144), Expect = 3e-12
 Identities = 34/77 (44%), Positives = 46/77 (59%)
 Frame = +1

Query: 52  EFDASPDGAYNYNFEXSNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTNTDGKPETI 231
           + + + DG Y  NFE SNGI   E+G+ K+    DN+  V+   +GS SYT  DG+  +I
Sbjct: 33  QLEVNFDGNYINNFETSNGISHQESGQPKQV---DNETPVVS--QGSDSYTAPDGQQVSI 87

Query: 232 TYFADETGYHAQGESIP 282
           TY ADE G+  QG  IP
Sbjct: 88  TYVADENGFQVQGSHIP 104


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = -1

Query: 482 IVFVHDILKTQQIVKKNVQKNMAVSIKLITSNKRMWWMLRHT 357
           +V + +  KT + +    + N+A+S+ L  +  ++W+  R T
Sbjct: 20  LVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRT 61


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 100 SNGIVRSETGELKEAL 147
           S G  R  TGE+KEA+
Sbjct: 404 SKGEYRMSTGEMKEAI 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,358
Number of Sequences: 438
Number of extensions: 2193
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)