Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_F22
         (805 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   2.2  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       22   5.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.7  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +1

Query: 499 DQRKC**NEKYRARCTYCRDWRSVQEG 579
           +++ C  +++ R RC YCR  + +  G
Sbjct: 124 EEKNCIIDKRQRNRCQYCRYQKCLNMG 150


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
 Frame = +2

Query: 419 YSLPVNSSAADVTAELTSDGYL-----VVTAPISENVDKTKNTERVVPIVETGAPYKKDE 583
           Y  P  +   D +A + ++G +       T P  E V K  +  + V  V  G  Y+K  
Sbjct: 147 YGKPEQNYEVDESASVMTNGRIHGIQPSPTLPSKEEVSKKIDDNQKVGYVVEGRNYRKYR 206

Query: 584 PVEKTT 601
             E+T+
Sbjct: 207 VEERTS 212


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = -1

Query: 220 PQRSKQTEWRKVQPWERELVICNGDGLRDNFFVP 119
           P +     W  V  W   L + N   + D FF P
Sbjct: 621 PHQQHLDAWYWVMDWSDMLSVGNMTLILDKFFFP 654


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,207
Number of Sequences: 336
Number of extensions: 2565
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)