Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_F21
(813 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 28 1.4
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 28 1.8
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 3.2
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S... 27 4.2
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc... 27 4.2
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 26 5.5
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi... 26 5.5
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.7
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 25 9.7
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 9.7
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 25 9.7
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 132 TKMLRSIYKVSGTVKNISTKVKFPEKFKGTIIEKWADYWKNLFID 266
T + YK++ + N + P KF IE W+ K+LF+D
Sbjct: 463 TTLADPCYKLAESWTNSAKNSDDPSKFSSKDIENWSAGQKSLFLD 507
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 465 EHLRFLDTCYNQEVIHYRSLGILSVMYTSELSNSCDLYRAH-CTYTKPTY 611
EH+ FLDTC + ++ + +L V S+L N+C ++ ++ T+T+ Y
Sbjct: 680 EHIDFLDTCLKECML--TNSRLLKVQ--SKLLNTCAMFASYTSTFTRSLY 725
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 222 IIEKWADYWKNLFIDYRQMLQDL 290
+I+ W W NLFI Y ++ DL
Sbjct: 1418 LIKTWNTTWNNLFIYYPELSNDL 1440
>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 445
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 330 WTTGIITFYLLSRNNPTECD 389
W+ G+I F LLS N+P+ D
Sbjct: 354 WSLGVIMFLLLSGNSPSFAD 373
>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 439 SLTSPTSLFIIFKLSLKSHSVGLFL 365
S+++PT +F + L L S+ VG+FL
Sbjct: 108 SVSNPTLMFFVGSLGLLSNFVGIFL 132
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 208 FSGNFTLVLIFLTVPDTL*ILRNIFVVFIYYEEIPNVIXHILF 80
F+ +L F V D I IF VF+++ +IP + H+ F
Sbjct: 5 FNVGILCLLRFKNVQDNKIIFEAIFEVFLHFLKIPVYMTHLGF 47
>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
Hat1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 213 KGTIIEKWADYWKNLFIDYRQMLQDLRSDIQDDPMKAMK 329
K IEK + ++N F +Y+Q+++ L +D P K K
Sbjct: 334 KSERIEKIHNAYENQFDEYKQIVKKLPKLKEDSPRKRQK 372
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 405 SSCL*NRILLDYFLIIDKRL*CQLSTSWLSLDHLVYHSLNLATFVD 268
SSC+ I L + ID+R Q T +L L Y+SL+ + D
Sbjct: 199 SSCVICSIRLANLVYIDRRQSSQQITDYLDLSLQTYYSLDKSNVPD 244
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 586 WALYRSQELLNSEVYITDKIPK 521
WA Y S N +VY++ K P+
Sbjct: 335 WAYYNSMTQYNLDVYLSSKAPQ 356
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 165 PTLYKYFVTFLWSLFITKKYQMSSXTFYFILCKYL 61
P+ + + FL +FI KYQ + ++CK L
Sbjct: 40 PSTKESVLHFLELIFINLKYQSKKWLYSLVICKSL 74
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 708 EVLWFD-LVLIIM*KLICLLACLIMKYSVQ 794
++LW D L ++ K+IC LA L +KY ++
Sbjct: 91 KLLWDDGLPALVERKVICTLASLTIKYELE 120
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,544,164
Number of Sequences: 5004
Number of extensions: 80371
Number of successful extensions: 212
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -