Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_F21
         (813 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0069 + 536787-537068,537193-537493,537528-537581,538848-53...    30   2.5  
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967...    28   7.7  

>01_01_0069 +
           536787-537068,537193-537493,537528-537581,538848-539241,
           539345-539595,539678-539798,539893-540133,540341-540445,
           540571-540615,540738-540890,541132-541410,541705-541841,
           541975-542017,542228-542329
          Length = 835

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +3

Query: 192 VKFPEKFKGTIIEKWADYWKNLFIDYRQMLQDLR 293
           VKF ++F+G ++ +W    K+ F+DY  + +DL+
Sbjct: 2   VKFSKQFEGQLVPEW----KHAFVDYSLLKKDLK 31


>01_03_0284 -
           14595643-14595663,14595978-14596018,14596379-14596732,
           14597023-14597494,14597524-14600001
          Length = 1121

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 447 LNPKAVEHLRFLDTCYNQEVIHY-RSLGILSVMYTSELS 560
           + PK + HLR+L+  Y+Q ++     + IL  + T +LS
Sbjct: 591 IQPKHLHHLRYLNLTYSQNMVRLPEEISILYNLQTLDLS 629


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,535,412
Number of Sequences: 37544
Number of extensions: 431550
Number of successful extensions: 919
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)