Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_F21
(813 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19727| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 8e-16
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41) 31 1.5
SB_55531| Best HMM Match : Phage_integrase (HMM E-Value=0.41) 30 2.6
SB_52517| Best HMM Match : Phage_integr_N (HMM E-Value=0.6) 30 2.6
SB_50085| Best HMM Match : BRAP2 (HMM E-Value=3.3) 30 2.6
SB_30365| Best HMM Match : Phage_integr_N (HMM E-Value=0.6) 30 2.6
SB_29313| Best HMM Match : Phage_integr_N (HMM E-Value=0.6) 30 2.6
SB_55111| Best HMM Match : Phage_integrase (HMM E-Value=0.15) 30 2.6
SB_29308| Best HMM Match : Phage_integrase (HMM E-Value=0.15) 30 2.6
SB_20342| Best HMM Match : Phage_integr_N (HMM E-Value=0.6) 30 2.6
SB_3705| Best HMM Match : Phage_integr_N (HMM E-Value=0.6) 30 2.6
SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09) 30 2.6
SB_5523| Best HMM Match : Extensin_2 (HMM E-Value=0.0052) 29 4.5
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
>SB_19727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 81.4 bits (192), Expect = 8e-16
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 1/149 (0%)
Frame = +3
Query: 255 LFIDYRQMLQDLRSDIQDDPMKAMKWTTGIITF-YLLSRNNPTECDFKDNLKIINNEVGL 431
+++DY+ + D + P++ G++ F Y++ NNP + + D L NE+
Sbjct: 38 VYVDYKAVFVDFFKGARSKPLRT-SLGLGLLGFGYVVYLNNPDDDSYNDTLLDNANELLQ 96
Query: 432 VSEECLNPKAVEHLRFLDTCYNQEVIHYRSLGILSVMYTSELSNSCDLYRAHCTYTKPTY 611
V E NP + + + + + Q + +S G+ S+M +E CDLY HC YTK +
Sbjct: 97 VGERIRNPSSDVYTQEMLQLFYQGKLRRQSFGLFSLMMQTEFGKDCDLYEQHCYYTKTRW 156
Query: 612 FSFPSRIVDIGFMGKWWNLFIKSTNYDVN 698
+ D G +G W+ L +YDVN
Sbjct: 157 VDLWKYVRDFGILGHWYKLETAMIDYDVN 185
>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 197 FHFGAYIFNRSRHFI-NTS*HFCGLYLLRRNTKCHPTHFILFYVSTYVVL 51
F++ YI R H+ T+ +F LLR K H T I FY + Y++L
Sbjct: 158 FYYANYIILRKLHYTAQTTLYFANYILLR---KLHSTTQITFYYANYILL 204
>SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)
Length = 1017
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +3
Query: 315 MKAMKWTTGIITFYLLSRNNPTECDFKDNLKIINNEVGLVSEECLNPKAVEHLRFLDTCY 494
+K ++WTT I ++ NN C+ + K + + L+ EECL P V L FL+
Sbjct: 303 VKGIEWTT--IEYF----NNAVICELIE--KNHSGILALLDEECLRPGEVSDLTFLEKLD 354
Query: 495 NQEVIH 512
Q + H
Sbjct: 355 KQWIHH 360
>SB_55531| Best HMM Match : Phage_integrase (HMM E-Value=0.41)
Length = 269
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 463 TAFGFKH--SSLTSPTSLFIIFKLSLKSHSVGLFLDNR*KVMMPVVH 329
+A G+ H S L P+ F I ++ +G LD+R + +P++H
Sbjct: 32 SALGYLHRLSDLPDPSKAFFILQMLKGYGKIGFRLDSRLPITLPILH 78
>SB_52517| Best HMM Match : Phage_integr_N (HMM E-Value=0.6)
Length = 271
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 463 TAFGFKH--SSLTSPTSLFIIFKLSLKSHSVGLFLDNR*KVMMPVVH 329
+A G+ H S L P+ F I ++ +G LD+R + +P++H
Sbjct: 88 SALGYLHRLSDLPDPSKAFFILQMLKGYGKIGFRLDSRLPITLPILH 134
>SB_50085| Best HMM Match : BRAP2 (HMM E-Value=3.3)
Length = 228
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 463 TAFGFKH--SSLTSPTSLFIIFKLSLKSHSVGLFLDNR*KVMMPVVH 329
+A G+ H S L P+ F I ++ +G LD+R + +P++H
Sbjct: 32 SALGYLHRLSDLPDPSKAFFILQMLKGYGKIGFRLDSRLPITLPILH 78
>SB_30365| Best HMM Match : Phage_integr_N (HMM E-Value=0.6)
Length = 179
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 463 TAFGFKH--SSLTSPTSLFIIFKLSLKSHSVGLFLDNR*KVMMPVVH 329
+A G+ H S L P+ F I ++ +G LD+R + +P++H
Sbjct: 99 SALGYLHRLSDLPDPSKAFFILQMLKGYGKIGFRLDSRLPITLPILH 145
>SB_29313| Best HMM Match : Phage_integr_N (HMM E-Value=0.6)
Length = 211
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 463 TAFGFKH--SSLTSPTSLFIIFKLSLKSHSVGLFLDNR*KVMMPVVH 329
+A G+ H S L P+ F I ++ +G LD+R + +P++H
Sbjct: 99 SALGYLHRLSDLPDPSKAFFILQMLKGYGKIGFRLDSRLPITLPILH 145
>SB_55111| Best HMM Match : Phage_integrase (HMM E-Value=0.15)
Length = 336
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 463 TAFGFKH--SSLTSPTSLFIIFKLSLKSHSVGLFLDNR*KVMMPVVH 329
+A G+ H S L P+ F I ++ +G LD+R + +P++H
Sbjct: 99 SALGYLHRLSDLPDPSKAFFILQMLKGYGKIGFRLDSRLPITLPILH 145
>SB_29308| Best HMM Match : Phage_integrase (HMM E-Value=0.15)
Length = 269
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 463 TAFGFKH--SSLTSPTSLFIIFKLSLKSHSVGLFLDNR*KVMMPVVH 329
+A G+ H S L P+ F I ++ +G LD+R + +P++H
Sbjct: 32 SALGYLHRLSDLPDPSKAFFILQMLKGYGKIGFRLDSRLPITLPILH 78
>SB_20342| Best HMM Match : Phage_integr_N (HMM E-Value=0.6)
Length = 331
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 463 TAFGFKH--SSLTSPTSLFIIFKLSLKSHSVGLFLDNR*KVMMPVVH 329
+A G+ H S L P+ F I ++ +G LD+R + +P++H
Sbjct: 191 SALGYLHRLSDLPDPSKAFFILQMLKGYGKIGFRLDSRLPITLPILH 237
>SB_3705| Best HMM Match : Phage_integr_N (HMM E-Value=0.6)
Length = 239
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 463 TAFGFKH--SSLTSPTSLFIIFKLSLKSHSVGLFLDNR*KVMMPVVH 329
+A G+ H S L P+ F I ++ +G LD+R + +P++H
Sbjct: 99 SALGYLHRLSDLPDPSKAFFILQMLKGYGKIGFRLDSRLPITLPILH 145
>SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09)
Length = 944
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 463 TAFGFKH--SSLTSPTSLFIIFKLSLKSHSVGLFLDNR*KVMMPVVH 329
+A G+ H S L P+ F I ++ +G LD+R + +P++H
Sbjct: 864 SALGYLHRLSDLPDPSKAFFILQMLKGYGKIGFRLDSRLPITLPILH 910
>SB_5523| Best HMM Match : Extensin_2 (HMM E-Value=0.0052)
Length = 532
Score = 29.1 bits (62), Expect = 4.5
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -3
Query: 790 TEYFIIRQANKHINFHIIISTRSNHKTS 707
T + ++ Q +KH+ +H++++T S H T+
Sbjct: 475 TYHSMLTQPSKHLTYHVMLTTLSKHLTN 502
>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 402 LKIINNEVGLVSEECLNPKAVEHLRFLDTCYNQEVIHYRSLGILSVMYTSELSNSCDL 575
L+ NE G S+ P +E + N ++H R L +LS+M ++ CD+
Sbjct: 38 LQAETNEAGEKSKILKCPCCLEKTETANGEANYSILHSRFLEVLSIMESNTSGKECDI 95
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,696,855
Number of Sequences: 59808
Number of extensions: 531716
Number of successful extensions: 1337
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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