Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_F21
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   4.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   7.8  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -1

Query: 168 FPTLYKYFVTFLWSLFITKK 109
           FP L+  F+   W + + KK
Sbjct: 370 FPILFMLFIILYWPILLFKK 389


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 174 KNISTKVKFPEKFKGTIIEKWADYWKN 254
           + I   V+F    KGT I+ W D   N
Sbjct: 385 RQIYNMVRFRNLVKGTKIDNWWDNGSN 411


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 417 NEVGLVSEECLNPKAVEHLRFLD 485
           N     SEE +N + +E LRFL+
Sbjct: 796 NFADFYSEESINNQGLECLRFLN 818


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,889
Number of Sequences: 438
Number of extensions: 5756
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)