Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_F16
         (845 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    24   1.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   4.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   4.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   4.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   4.0  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         22   5.3  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   7.0  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 171 SFRSGPARWLRIRAATLTNSIEMLHFQFKRMLNKELSHFSESSKSGN 311
           ++ S   RW   R   LT     + FQ +RM NK+ S    + +  N
Sbjct: 266 AYVSKQKRWELARNLNLTERQVKIWFQNRRMKNKKNSQRQAAQQQNN 312


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 452 HRSRWSAMTWFFLFLG 405
           HR RWS + + +  LG
Sbjct: 694 HRKRWSQVMYMYYLLG 709


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 452 HRSRWSAMTWFFLFLG 405
           HR RWS + + +  LG
Sbjct: 694 HRKRWSQVMYMYYLLG 709


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 452 HRSRWSAMTWFFLFLG 405
           HR RWS + + +  LG
Sbjct: 694 HRKRWSQVMYMYYLLG 709


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 452 HRSRWSAMTWFFLFLG 405
           HR RWS + + +  LG
Sbjct: 694 HRKRWSQVMYMYYLLG 709


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 252 TGNATFRLNSSMSPRESATNGPVPNESFVPRRTRAFHNEIILRN 121
           TG   + LNS   PR+ + +    N+S   R+ +    +   RN
Sbjct: 187 TGKTQYNLNSKSLPRQYSQSRGRHNQSRSKRQPKTGREDQTRRN 230


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 823 LSAGVFNSTFVDCVTSAAW 767
           LS   F++ + DC T+++W
Sbjct: 19  LSCKDFDTLYRDCTTASSW 37


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,558
Number of Sequences: 336
Number of extensions: 4075
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23348025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)