Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_F16
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    29   1.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   1.9  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    27   4.4  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    27   4.4  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   5.8  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    26   5.8  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   7.7  

>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +3

Query: 303 SGNQISEYICSTFLDKQQELDLPSLQVEETSERGAKKKEKPRHGGPATTMSQISGVKRTL 482
           S N+ +E+I    LD   +LD  S  V+E     AKK+++       TT+   S  +R L
Sbjct: 350 SANEENEFINHDGLDSSLDLDGDSYMVDENDLNLAKKRKQKALIDRTTTIENGSSKRRLL 409


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/19 (57%), Positives = 17/19 (89%)
 Frame = +1

Query: 745 TILSTTLSTLPMSHSLQTY 801
           +ILS+++ST+P+S SL TY
Sbjct: 648 SILSSSISTIPISSSLSTY 666


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/66 (21%), Positives = 26/66 (39%)
 Frame = +3

Query: 645 YTAFTSRELLTTLQIPARTFLAFAVTLXEHYIRDNPFHNSLHAADVTQSTNVLLNTPALN 824
           Y  F   +      +P +TF  +     +      PF   +H A+ T ++  + + P L+
Sbjct: 164 YLCFAEYDKRLNCLVPLKTFQFYVTESDQDSTPATPFPMPMHLAEETATSPEISDAPPLS 223

Query: 825 AVFTPL 842
               PL
Sbjct: 224 GNVDPL 229


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 429 DVVFPFSWRRVPKFLRLVRMVSQAPV 352
           D++ P   +R+P F R +++VS  P+
Sbjct: 370 DIILPMDLQRLPAFQRWIQLVSGLPL 395


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 349  LSKNVEQIYSEIWLPDLLDSEKWLSSLFSILLNWKCNISIEFVNVA 212
            LS  +   ++EIW+P ++D+E  L  +   L N K  ++   V  A
Sbjct: 1374 LSPALRNRFTEIWVPPMVDTEDILKIVEGKLHNNKIELARPLVEYA 1419


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 28/91 (30%), Positives = 39/91 (42%)
 Frame = -3

Query: 444 SLVRHDVVFPFSWRRVPKFLRLVRMVSQAPVVCPKMWSRYTRRSGCRTCWTLRSGSAPCS 265
           SL+  D VFP S   +P+   L   +S +P +    W   +  +     WT      P  
Sbjct: 76  SLLASDEVFPSSV--MPQLRPLDSSLSVSPEMDGWPWHHNSSSNPQGYAWT------PSL 127

Query: 264 ASS*TGNATFRLNSSMSPRESATNGPVPNES 172
            SS   NAT  L+S  SP  + +N P P  S
Sbjct: 128 LSS---NATSYLHSGSSPHGNTSNHPSPISS 155


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
 Frame = +3

Query: 240 LHFQFKRMLNKELSHFSESSKSGNQISEYICSTFLDKQQELDLPSLQVEETSERGAK--- 410
           L    K M +K     S + K+G+   +   +  + +Q +  +  +Q   +S  GAK   
Sbjct: 433 LRINDKTMTSKRFDDLSATRKTGDNTKDRKQANKVRRQDQFFISHIQKYASSLTGAKGGQ 492

Query: 411 -KKEKPRHGGPATTMSQISGVKRTLTHTNSFTGE 509
            K++     GP +T      VK   +  NS  G+
Sbjct: 493 LKRQTIFTQGPNSTKESKQAVKEETSVKNSPKGK 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,327,566
Number of Sequences: 5004
Number of extensions: 66620
Number of successful extensions: 206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)