Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_F16
(845 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59137| Best HMM Match : DUF1417 (HMM E-Value=0.29) 117 1e-26
SB_8241| Best HMM Match : PDEase_I (HMM E-Value=0) 64 1e-10
SB_2333| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 9e-05
SB_6007| Best HMM Match : PDEase_I (HMM E-Value=0) 42 5e-04
SB_25695| Best HMM Match : PDEase_I (HMM E-Value=3.1e-36) 33 0.39
SB_14962| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 31 1.6
SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97) 30 2.1
SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_31286| Best HMM Match : HEAT (HMM E-Value=0.092) 29 4.7
SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0) 29 4.7
SB_33744| Best HMM Match : SMC_N (HMM E-Value=0) 29 6.3
SB_27805| Best HMM Match : MAM (HMM E-Value=0) 29 6.3
SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13) 28 8.3
>SB_59137| Best HMM Match : DUF1417 (HMM E-Value=0.29)
Length = 421
Score = 117 bits (281), Expect = 1e-26
Identities = 66/203 (32%), Positives = 112/203 (55%)
Frame = +3
Query: 216 TLTNSIEMLHFQFKRMLNKELSHFSESSKSGNQISEYICSTFLDKQQELDLPSLQVEETS 395
T T+ EM +FKR+LN+EL FSE+++SGNQ+S ++ +TF DKQ E+ ET+
Sbjct: 231 THTSVSEMASNKFKRLLNRELKDFSEANQSGNQVSAWVYNTFTDKQLEV--------ETA 282
Query: 396 ERGAKKKEKPRHGGPATTMSQISGVKRTLTHTNSFTGERVPRYGVETPHXXXXXXXXSDL 575
+ +K K + ++ + +K + + F G+ + ++
Sbjct: 283 Q--SKTKRDCIRARSRSMVNGVRKLKDCIVFLDQFQGK------TKCILTKFSNKILENV 334
Query: 576 DRWGVDIFRIGDLSCGRPLTAVAYTAFTSRELLTTLQIPARTFLAFAVTLXEHYIRDNPF 755
++W D F +G+ + G P+ AV+YT +R+LL +I TF+ + + HY++D PF
Sbjct: 335 NKWDFDAFALGEATNGHPMLAVSYTILQARDLLKIFKIKPTTFINYMTLVENHYLKDVPF 394
Query: 756 HNSLHAADVTQSTNVLLNTPALN 824
HN +HAADVTQ+ +VLL+ A +
Sbjct: 395 HNCIHAADVTQTAHVLLSAQAFD 417
>SB_8241| Best HMM Match : PDEase_I (HMM E-Value=0)
Length = 388
Score = 64.1 bits (149), Expect = 1e-10
Identities = 28/61 (45%), Positives = 41/61 (67%)
Frame = +3
Query: 660 SRELLTTLQIPARTFLAFAVTLXEHYIRDNPFHNSLHAADVTQSTNVLLNTPALNAVFTP 839
+R+LL +I TF+ + + HY++D PFHN +HAADVTQ+ +VLL+ A + VFT
Sbjct: 3 ARDLLKIFKIKPTTFINYMTLVENHYLKDVPFHNCIHAADVTQTAHVLLSAQAFDNVFTD 62
Query: 840 L 842
L
Sbjct: 63 L 63
>SB_2333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 44.8 bits (101), Expect = 9e-05
Identities = 27/87 (31%), Positives = 37/87 (42%)
Frame = +3
Query: 582 WGVDIFRIGDLSCGRPLTAVAYTAFTSRELLTTLQIPARTFLAFAVTLXEHYIRDNPFHN 761
W DI ++ S RPL + + L I + + +Y R N +HN
Sbjct: 138 WDFDILKLEKASNHRPLYFLGLKILNRFRVCEKLNISEDYVKNWLQLIEANYHRKNAYHN 197
Query: 762 SLHAADVTQSTNVLLNTPALNAVFTPL 842
S HAADV +T V L + AV PL
Sbjct: 198 STHAADVLHATAVFLAKERVKAVLEPL 224
>SB_6007| Best HMM Match : PDEase_I (HMM E-Value=0)
Length = 511
Score = 42.3 bits (95), Expect = 5e-04
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +3
Query: 627 PLTAVAYTAFTSRELLTTLQIPARTFLAFAVTLXEHYIRDNPFHNSLHAADVTQSTNVL 803
P+ V+Y F + +IP R FL + L Y P+HNS+HA+DV Q L
Sbjct: 87 PMVGVSYRIFQNAGFFEIFKIPERKFLNYFFALESGY-HSIPYHNSIHASDVLQGVYFL 144
>SB_25695| Best HMM Match : PDEase_I (HMM E-Value=3.1e-36)
Length = 646
Score = 32.7 bits (71), Expect = 0.39
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +3
Query: 645 YTAFTSRELLTTLQIPARTFLAFAVTLXEHYIR-DNPFHNSLHAADVTQSTNVLLNTPAL 821
Y + +I A T F + Y R NP+HN HAADVT + + L +
Sbjct: 450 YKMHVPENVQKAFEIHAMTLDRFLQDVETGYKRHSNPYHNDCHAADVTHTVHYFLECMGV 509
Query: 822 NAVFTPL 842
+ + L
Sbjct: 510 SKYLSDL 516
>SB_14962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +3
Query: 195 WLRIRAATLTNSIEMLHFQFKRMLNKELSHFSESSKSGNQISEYICSTFLDKQQELDL 368
WL + + +TN ++ + K L+ F+E++ + N I +Y FL+ +Q +DL
Sbjct: 30 WLPLNPSGVTNLLQTKTNDYNAQQQKRLTFFNENNINDNMIHDY---DFLENKQFVDL 84
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +3
Query: 201 RIRAATLTNSIEMLHFQFK-RMLNKELSHFSESSKSGNQISEYICST--FLDKQQELDLP 371
+ R TL I+ + + R ++K + + +E + + ST LD+Q + +
Sbjct: 224 KARKKTLEQCIKKCKIEEEARKISKWIKYEAEDYLGYRDCGDSVASTQVLLDEQTQFEQT 283
Query: 372 SLQVEETSERGAKKKEKPRHG 434
+ EET ER A++ EK HG
Sbjct: 284 ARDREETVERLARETEKLAHG 304
>SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)
Length = 971
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 243 HFQFKRMLNKELSHFSESSKSGNQISEYICSTFLDKQQELDLPSLQVEETS 395
+F+FK+ N+ L+H S++SGN I Y+ S D + D ++ E S
Sbjct: 557 NFEFKQS-NECLAHLGHSARSGNNIRVYLPSHSADGSRPSDTWAITQREKS 606
>SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 627 PLTAVAYTAFTSRELLTTLQIPARTFLAFAVTLXEHYIRDNPFHNSLHAADVTQSTNVLL 806
P T A+T T + T P L ++ L +I D+P HN+ H D + +
Sbjct: 377 PSTQPAFTYTTPLDSALTYTTPLDPALTYSTPLDSAHIFDSPRHNT-HIFDSPRHNTNIF 435
Query: 807 NTPAL-NAVF 833
++P L N +F
Sbjct: 436 DSPLLSNHIF 445
>SB_31286| Best HMM Match : HEAT (HMM E-Value=0.092)
Length = 1270
Score = 29.1 bits (62), Expect = 4.7
Identities = 48/196 (24%), Positives = 69/196 (35%), Gaps = 14/196 (7%)
Frame = +3
Query: 267 NKELSHFSESSKSGNQISEYIC-STFLDKQQELDLPSLQVEETSERGAKKKEK-----PR 428
++ LSH SE S + S+ + S L+ L +L ++ + GA K K
Sbjct: 892 SQRLSHASEDSSLSQEASQAVADSGNLEAAATHQLVTLVMDFLAYPGANKNSKRGQFVQT 951
Query: 429 HGGPATTMSQISGVKRTLT-HTNSFTGE--RVPRYGVETPHXXXXXXXXSDLDRWGVDIF 599
TMS GV FTG+ R+ + V + WG ++
Sbjct: 952 QSFEVVTMSNYLGVLMGYDIKVGEFTGDPRRLRSFPVFHAYMSGIVQVLDQNQEWGGELL 1011
Query: 600 RIGD---LSCG--RPLTAVAYTAFTSRELLTTLQIPARTFLAFAVTLXEHYIRDNPFHNS 764
+ L C RP+ FT L L P R AV + + PFH
Sbjct: 1012 NLTLQLLLFCAAPRPMNRTQAPDFT----LIRLPPPMRRIWLLAVLII---LYKYPFHED 1064
Query: 765 LHAADVTQSTNVLLNT 812
H D V+LNT
Sbjct: 1065 SHRRDTRNLIAVVLNT 1080
>SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1101
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -3
Query: 348 CPKMWSRYTRRSGCRTCWTLRSGSAPCSASS*TGNAT 238
C + YT SGC C SGSA TGN T
Sbjct: 811 CNDSFYGYTTGSGCVECRCNMSGSADAQCDDVTGNCT 847
>SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)
Length = 1014
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +3
Query: 210 AATLTNSIEMLHFQFKRMLNKELSHFSESSKSGNQISEYICSTFLDKQQELDLPSLQVEE 389
A N IE+ + K +EL E K + +E KQQE++ L++EE
Sbjct: 590 ATAKCNDIELKMKEAKTYRERELKKAEEDLKKAKKRAEQSIKETKTKQQEVEGMQLEIEE 649
Query: 390 TSERGAKKKEK 422
+ A +E+
Sbjct: 650 IVKEMASIEEQ 660
>SB_27805| Best HMM Match : MAM (HMM E-Value=0)
Length = 222
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 317 LRVYLLHIFGQTTGA*LTILTSRRNFGTRRQEKGKTTSWRTSDYDVTNIGC 469
LR Y H+ GQ G + SR+ F Q + +W+ ++ D+T GC
Sbjct: 101 LRFYY-HMLGQHQGTLNVFVGSRKVFS---QSGNQGANWKLAEVDITQSGC 147
>SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)
Length = 1027
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +3
Query: 633 TAVAYTAFTSRELLTTLQIPARTFLAFAVTLXEHYIRDNPF-HNSLHAADVTQSTNVLLN 809
T + T SR LLT IP+RT L + NP +L S N+L
Sbjct: 333 TLITLTPIPSRTLLTLTPIPSRTLLTLTPIPSRTLLTLNPIPSRNLLTLTPIPSRNLLTL 392
Query: 810 TP 815
TP
Sbjct: 393 TP 394
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,065,029
Number of Sequences: 59808
Number of extensions: 533263
Number of successful extensions: 1490
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1483
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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