Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_F14
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 32 0.084
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.78
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 28 1.4
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 27 2.4
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 27 2.4
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 4.2
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 5.5
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 26 5.5
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 5.5
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 26 5.5
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 7.3
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.6
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le... 25 9.6
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 32.3 bits (70), Expect = 0.084
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 459 IKVEEPAAQPEDSK-TEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKID 617
I VE QPEDSK T+V +S +EK + + S D A + +++ +D
Sbjct: 525 IFVENALKQPEDSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLD 578
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.78
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +3
Query: 414 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 584
AK S D K + K + A+ PE SK V+ KEE S +++E S+ +
Sbjct: 41 AKQSSKTDVSPKKSK-KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 28.3 bits (60), Expect = 1.4
Identities = 25/79 (31%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Frame = +3
Query: 462 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVXSD 641
+VEE A+ S E S KPSA AE D I V I L
Sbjct: 289 RVEEKLAKRTQSFRREDNANRERSTSRKPSADKAE-KTDKTDAIAEKVSDIRLGDGEKKS 347
Query: 642 AAAVPEI---KTPEAADAP 689
+ E+ KTP DAP
Sbjct: 348 SETDSEVAATKTPATEDAP 366
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +3
Query: 417 KSSEIPDAEAKSADI-KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII 593
K S+ P+ + + KVEEP+ + ++ + + TV + +E+ P A S
Sbjct: 446 KPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTF 505
Query: 594 PNMVKK 611
VKK
Sbjct: 506 SEDVKK 511
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 469 KNQLLSLKIQKLKYKLPSLKFQKKKNL 549
KN LLS KI + Y+ S+++QK KN+
Sbjct: 40 KNGLLSPKITQRFYQNSSIQYQKDKNI 66
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 26.6 bits (56), Expect = 4.2
Identities = 18/71 (25%), Positives = 28/71 (39%)
Frame = +3
Query: 510 QATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVXSDAAAVPEIKTPEAADAP 689
Q T+A PS +A S +P I+ N+ +A ++PE P A +
Sbjct: 362 QDTLASNHVPSAPSNESVSSAAPSKIPVPEEAS-INEHSNITDEAVSLPEPVYPNAPTSA 420
Query: 690 KLADNPVXEDK 722
NP D+
Sbjct: 421 VSVHNPTISDE 431
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 353 VFWGYIVLFGLWYSGYLVVTNW 288
VFW +IVL GL+Y Y V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 522 AEISKEEKPSATDAEGSADSAAIIPNMVKKI--DLAPNVXSDAAAVPEIKTPEA 677
A K+ +PS + +A + PN VK + D+ P + +I PEA
Sbjct: 556 ASALKDREPSEKELPSTAKETSFAPNAVKTLDEDITPQSSNWQTVAKQIIFPEA 609
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +3
Query: 435 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS 581
D + I E PA + K + + + S E+PS T EG+ D+
Sbjct: 601 DEYQRQLHIDFENPAVSASE-KLSTEEIIPQESNFEEPSTTKKEGNVDT 648
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 26.2 bits (55), Expect = 5.5
Identities = 24/74 (32%), Positives = 34/74 (45%)
Frame = +3
Query: 489 EDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVXSDAAAVPEIKT 668
E+S + +E+SK KP+ TD N K+I++A S A P+ T
Sbjct: 33 EESLPSILGEKSEVSKPFKPAVTDPS----------NAKKEINMAIESPSKKATSPKKAT 82
Query: 669 PEAADAPKLADNPV 710
P AA AP A + V
Sbjct: 83 P-AAVAPVEATSAV 95
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 441 EAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSAD 578
++K + KVEE ++ D K + ++ KEEK TD++ +AD
Sbjct: 476 DSKETEDKVEETESKEADVKAKETDSIEVDDKEEK---TDSKETAD 518
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 438 AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 575
AEA + D + P K V +VAE ++E + ++E A
Sbjct: 76 AEASTGDASTQSPETSENVVKNSVDESVAEKPEKEDLAVIESEDKA 121
>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
Leu1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 9.6
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +3
Query: 516 TVAEISKEEKPSATDAEGSADSAAII----PNMVKKIDLAPNVXSD 641
TVA+I KEE P T DSAA++ P + + L N+ D
Sbjct: 204 TVAKIFKEEYPHLTLKNQLIDSAAMLLVKSPRTLNGVVLTDNLFGD 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,393
Number of Sequences: 5004
Number of extensions: 37865
Number of successful extensions: 137
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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