Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_F12
         (828 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    26   0.32 
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    25   0.97 
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   3.0  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 777 CTCAHGYGGPSCDISG 824
           CTC  G+ G +C+ SG
Sbjct: 362 CTCPEGFYGKNCEFSG 377



 Score = 25.4 bits (53), Expect = 0.55
 Identities = 12/71 (16%), Positives = 27/71 (38%)
 Frame = +3

Query: 609 LNTVLNSGKCSELRHSRNIDXSKSVARAMRRTLTANXXXXXXXXXXXXXKCVXPNTCTCA 788
           L  + N+G C ++ +S     S   + +  +T                   +   +C C 
Sbjct: 152 LKKLCNNGTCEDIGNSHRCHCSDGYSGSYCQTEINECDSAPCQNGGTCLDLIGSYSCKCP 211

Query: 789 HGYGGPSCDIS 821
            G+ G +C+++
Sbjct: 212 KGFQGQNCELN 222



 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 774 TCTCAHGYGGPSC 812
           TC C +GY G  C
Sbjct: 84  TCHCPYGYTGKDC 96



 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 774 TCTCAHGYGGPSC 812
           TCTC  G+ G +C
Sbjct: 8   TCTCPLGFSGINC 20



 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +3

Query: 777 CTCAHGYGGPSCD 815
           C C  G+ GP C+
Sbjct: 284 CKCPPGFVGPRCE 296


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +2

Query: 659 KYRLXEECCEGYAPDADGEQCVPV--CVESCVXGKMC 763
           +Y   ++C E Y   AD EQC     C +  +  K+C
Sbjct: 32  EYEATDQCPEKYGFFADAEQCDKYYECNDGQITEKLC 68


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +2

Query: 350 NYTFSLINQMILFSKIF*WNS--MTTTQF 430
           N TFS  ++ + +SKI    S  MTTT F
Sbjct: 221 NLTFSWYSKKVFYSKIIISGSIFMTTTSF 249


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,771
Number of Sequences: 336
Number of extensions: 3876
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)