Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_F12
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    28   1.4  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   4.3  
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma...    26   7.5  

>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 568 HLIRLLFGYSYYRRIRFLSSADIRTFQLRCHG 473
           HL+   F  +YYR    LS   +R+FQ   HG
Sbjct: 774 HLLYEAFAVNYYRTRFLLSRKRVRSFQAVAHG 805


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = +2

Query: 347 LNYTFSLINQMILFSKIF*WN----SMTTTQFKMYLRIFSVLIITGTVAAQLKGPNVCTR 514
           + Y  S+INQ+  F  IF W+    +M   + +     F  L   G +    +  N C +
Sbjct: 143 VKYQKSIINQLKSFEAIFDWDNIFYTMDQNRSEAVNEAFISLFNAGLIYRANRFVNWCPK 202

Query: 515 QEPYTTIIRVSKQQ 556
            E   + I V  QQ
Sbjct: 203 LESAVSDIEVESQQ 216


>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 612 LVHLGSILKHHAFSFT**GCCLDTRIIVVYGSCL 511
           L+HL S+LK +A SFT      D +++   GS L
Sbjct: 137 LLHLASVLKENALSFT-NALVTDNQVVERTGSLL 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,072,979
Number of Sequences: 5004
Number of extensions: 61155
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)