Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_F12
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0589 + 19773904-19774032,19774224-19774298,19774947-197754...    32   0.64 
12_01_0949 - 9434951-9435131,9435555-9435682,9436493-9436666,943...    29   3.4  
10_08_0788 + 20553587-20553726,20554131-20554196,20554695-205549...    29   6.0  

>07_03_0589 +
           19773904-19774032,19774224-19774298,19774947-19775444,
           19775898-19776263,19776636-19776727,19776826-19776872,
           19776953-19777014,19778461-19778498,19779354-19779366
          Length = 439

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
 Frame = +2

Query: 464 ITGTVAAQLKGPNVCTRQEPYTTIIRVSKQQPYQVKEKAWCFSMLPRCTK-YSIKFRQVF 640
           I  T+A  +  P+       YT + +  + +P  +K+ A CF  L +  K Y++ +    
Sbjct: 52  IAKTIANDIIIPDPAPEWMCYTFLDKYDQLEPIFIKDSARCFLRLFKNWKGYTMSWNLTI 111

Query: 641 RTETLT------KYRLXEECCEGYAPDADGEQCVPVCV 736
             +TLT        R  +   EG AP+  G    P CV
Sbjct: 112 TAQTLTCMVSFNSLRCAKVVLEGRAPELLGVHANPNCV 149


>12_01_0949 -
           9434951-9435131,9435555-9435682,9436493-9436666,
           9436978-9437193,9437376-9437522
          Length = 281

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 626 FRQVFRTETLTKYRLXEECCEGYAPDADGEQCVPVCVESCVXGK 757
           F QV R+  +   R    C + + PDAD   CVP    S + GK
Sbjct: 239 FVQV-RSSVVAPRRQFNACWDWHLPDADDSGCVPAPDPSLILGK 281


>10_08_0788 +
           20553587-20553726,20554131-20554196,20554695-20554926,
           20555033-20555237,20555335-20555441
          Length = 249

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -3

Query: 664 IFRECLSSEHLPEFNTVFSTPGQHTETPCFFLHLIRLLFGYSYY 533
           IF +C  S H   F      P  H E  C F   ++++ G  +Y
Sbjct: 161 IFDDCAKSYHHYNFIMKSKCPDSHLEGSCLFFAEVKVVDGEKHY 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,535,902
Number of Sequences: 37544
Number of extensions: 337028
Number of successful extensions: 620
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)