Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_F12
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.85 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   2.0  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    23   2.6  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    23   2.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.6  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 243 WRKYFTKVYCFELFNFWVWPNFVEQ 317
           WR Y      +   N W+W  F+E+
Sbjct: 56  WRSYVVCDVAYNNVNNWLWTPFIER 80


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 322 ERCSTKFGQTQKLKSSKQ*TLVKYLRQV 239
           E C  K G    +K +K   L+KYLR+V
Sbjct: 491 ELCDGKPGLCDAMKPTKGTELLKYLRKV 518


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 474 VPVIINTENILKYILNCVV 418
           + V++NTE +L   +NC++
Sbjct: 33  IDVVLNTERLLNAYVNCLL 51


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 474 VPVIINTENILKYILNCVV 418
           + V++NTE +L   +NC++
Sbjct: 33  IDVVLNTERLLNAYVNCLL 51


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/40 (20%), Positives = 20/40 (50%)
 Frame = +2

Query: 404 WNSMTTTQFKMYLRIFSVLIITGTVAAQLKGPNVCTRQEP 523
           W  +     +++L +F++    GT+    + P++   +EP
Sbjct: 474 WKFVAMVLDRLFLWVFTLACTAGTLGIIFQAPSLYDTREP 513


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 643 SEHLPEFNTVFSTPGQHTET 584
           + H    N V+STPG H  T
Sbjct: 399 ASHNNLLNNVYSTPGPHHHT 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,347
Number of Sequences: 438
Number of extensions: 4229
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)