Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_F11
(784 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 27 2.3
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 27 4.0
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 27 4.0
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 7.0
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 7.0
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po... 26 7.0
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 26 7.0
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 25 9.3
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ... 25 9.3
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos... 25 9.3
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +1
Query: 484 RYWTCWNGTATEQLCIGGLLYNENAHSCDWPENVDGCQKHPL 609
+YW + A C+G L +++ CDW +++G P+
Sbjct: 469 KYWPDFC-KAAGVFCMGDLKSSDSLKVCDWQNDLEGLSNFPV 509
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -3
Query: 593 QPSTFSGQSQEWAFSLYKSPPMQSCSVAVPFQQVQYLVQEVSWPKIPYSQ 444
QP+T SG+S W F + + S V + V PK PY Q
Sbjct: 254 QPATVSGRSWSWVFMCALNSSVAGFSTLA--VNVNDFTRYVKHPKTPYVQ 301
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = +1
Query: 265 CDKYWECDN--GQSVQYDCPNGLV 330
CD+ W C+N + + CPNG++
Sbjct: 32 CDRVWPCENCKKRGIPNLCPNGIL 55
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 703 PAMLVFDR--RSLXCVVPPTEDCDIPTTT 783
P V+D R + +VP T+D DIP +T
Sbjct: 73 PGNAVYDITVRDIDAIVPVTDDVDIPAST 101
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 577 ENVDGCQKHPLCNEDPNGNVPLGK 648
E + G K LC++ P GN+P G+
Sbjct: 634 ETIWGLIKDVLCDDSPEGNLPDGE 657
>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 215 SRTRARPKLE*WPMTNTATSIGNVTTDNRYNTTAPMDL 328
SRT + P ++ + T N++T+ R TT+P+DL
Sbjct: 127 SRTESEPNVQ-----ISDTDFDNISTEPRNQTTSPLDL 159
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Frame = +1
Query: 253 DDKYCDKYWEC------DNGQSVQYDCPNGLVFAGKHRGVTEGC 366
D+ Y D+YWE D D N ++FAGK+ V C
Sbjct: 324 DEDYTDEYWEKRYVIREDQVPPQLLDLQNKVLFAGKYLNVVLEC 367
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = -3
Query: 722 SNTNIAGQRC--SRGYPPWHCQYRLQDLPKGTLPFGSSLQRGC 600
+ TN+ R Y W YR+ L GTLP RGC
Sbjct: 566 NGTNLKNWRILLKASYKFWLRTYRVFFLNNGTLPLNHPYVRGC 608
>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 238
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +1
Query: 166 SVLVILAAINLTSCAQIEDPCK-TKARIVADDKYCDKYWE 282
S I+ A N+ Q D K + I+ D K+C K W+
Sbjct: 102 SEAAIVLAKNIARHRQFSDKVKFQQLDIIKDSKFCSKDWD 141
>SPCC645.11c |mug117||meiotically upregulated gene
Mug117|Schizosaccharomyces pombe|chr 3|||Manual
Length = 186
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 649 SCNRYWQCQGGYPRLQRCPAMLVFDRRSLXC 741
SC ++C+G YP + FD+ +L C
Sbjct: 109 SCTAIYECEGDYPARTGNEIIDEFDQLNLQC 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,099,610
Number of Sequences: 5004
Number of extensions: 65266
Number of successful extensions: 192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -