Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_F08
         (875 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   2.4  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       23   3.1  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    23   3.1  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   3.1  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   4.2  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   4.2  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    22   5.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.6  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   9.6  

>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 447 GHRRRPLNLHLETSPRARLA 506
           GHRRR + + L T   +RLA
Sbjct: 221 GHRRRAVEISLTTGNYSRLA 240


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 337 CSRRRGRIVLCRFEILGL 284
           C RRRGR    RF+ L L
Sbjct: 4   CPRRRGRQTYTRFQTLEL 21


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 337 CSRRRGRIVLCRFEILGL 284
           C RRRGR    RF+ L L
Sbjct: 155 CPRRRGRQTYTRFQTLEL 172


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 337 CSRRRGRIVLCRFEILGL 284
           C RRRGR    RF+ L L
Sbjct: 214 CPRRRGRQTYTRFQTLEL 231


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 257 PRTRRQSRRQSEYFEPTEDDSSPPPTASG 343
           PRTRR  +  ++   PT ++  P    SG
Sbjct: 209 PRTRRVKKPGAKQGAPTAEEKRPRTAFSG 237


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 773 SHLLFVGWRTAPCIYDVEVGYHQTHLLG 690
           S L F G  + P   +  V +HQT LLG
Sbjct: 116 SDLYFPGATSQPPTDNSHVHHHQTSLLG 143


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 447 GHRRRPLNLHLETSPRARLA 506
           GHR+R + + L T   +RLA
Sbjct: 39  GHRQRAMEISLTTGNYSRLA 58


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 251  TKPRTRRQSRRQSEYFEPTEDDSSPPP 331
            T+P T   + R +    PT+  + PPP
Sbjct: 1063 TRPTTTSTTTRPTTTNWPTQGTTIPPP 1089


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 239 SYKMTKPRTRRQSRRQSEYFEPTEDDSS 322
           SY+ T   +RR+ ++ +   + TE DSS
Sbjct: 376 SYEPTYDNSRREGKQLNPLNKGTEADSS 403


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,068
Number of Sequences: 336
Number of extensions: 4404
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)