Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_F08
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    34   0.031
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    29   0.87 
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    28   2.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.5  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.6  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    26   6.1  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    26   8.1  
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   8.1  

>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 33.9 bits (74), Expect = 0.031
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +2

Query: 392 NQEETFEKLL--HTVLNQSHRSSPPPAQPALGNFASCKARYSGAPDESLDGFIDAVEAY 562
           N+ +TF+ L+  H VL + H+S+   +Q   G   +C+ +Y G  + S  G+ D +  Y
Sbjct: 55  NEVQTFKALITIHRVLQEGHKSALVDSQSEKGWLKTCERQYDG--ESSPKGYSDLIRDY 111


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = +2

Query: 239 SYKMTKPRTRRQSRRQSEYFEPTEDDS-SPPPTAS--GNISVNDMVAMMSTWQRNQEETF 409
           S +   P TR +S   SE   P   DS +PPP  S   +I    ++ ++ST + +Q +T 
Sbjct: 3   SQEQQTPETREKSSSTSESGHPISLDSKTPPPNDSKIESIVKAQILFLLSTLREDQYDTK 62

Query: 410 EKLLHTVLNQS 442
            + +  ++N++
Sbjct: 63  LEQIRQLINKN 73


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +3

Query: 729 VYTRSCSPTHKKQVRKQNSSSLKLERYYHVCQRTI*QPK 845
           V+T +C P+ K+ V+KQ   +L  ++YY + + +   PK
Sbjct: 25  VHTNNCKPS-KEDVKKQPEIALLYKQYYELKRESSITPK 62


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +2

Query: 239 SYKMTKPRTRRQSRRQSEYFEPTEDDSSPPPTASGNISVNDMVAMMSTWQRNQE 400
           S+   K + +++ R   ++ E  E+D  PPP  +   S    +A  S+   N +
Sbjct: 731 SHDREKEKEKKKDREHRKHRETEEEDEGPPPQPARPESTRPALAPPSSSHSNDK 784


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 715 PTSTSYIQGAVRQPTKSK*ENRTLHL*NSSATITSAKGRSDNQSTXGHGV 864
           P S+S+I   V   ++    +      +SSAT+TS+   S   S+  H +
Sbjct: 74  PASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSHAL 123


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
 Frame = +2

Query: 428 VLNQSHRSSPPPAQPALGNFASCKARYS-GA----PDESLDGFIDAVEAYKECANVSETN 592
           +L Q  + SP      +  F  C + +S GA    P  +L+  +   +A     N     
Sbjct: 532 ILTQRQKKSPL----IVSEFIGCASMFSNGAFIVNPWSTLELSLSMKKALTLSTNERNQR 587

Query: 593 ALRGLSMLLTHEAATWWQGVKTTMNK 670
               L ++LTH A+ W  G +T + K
Sbjct: 588 YSNCLDVVLTHSASNWVTGFETKLKK 613


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +2

Query: 524 ESLDGFIDAVEAYKECANVSETN--ALRGLSMLLTHEAATWWQGVKTTMNKWDHALTSL 694
           ++++ F ++ + +   A + E N  + R  +ML        W G++   NKWD  LT L
Sbjct: 55  KTVEQFRNSCDKFASIATLEEWNDMSFRTQAMLFL---CYLWLGIQPRTNKWDKFLTVL 110


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
 Frame = -2

Query: 784 EFCFLTCFLWVGEQL------LVYTMWRSAITKRTS 695
           EFCFLT F +  EQ       +V+  W + I KR S
Sbjct: 208 EFCFLTWFEYTMEQNSVELLDIVFGFWNNIIEKRFS 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,558,099
Number of Sequences: 5004
Number of extensions: 72300
Number of successful extensions: 225
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)