Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_F08
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0316 + 16684100-16684339,16684425-16685132,16685241-166859... 34 0.17
05_03_0132 - 8786518-8786827,8786897-8787164,8787296-8788005,878... 31 1.2
04_04_1635 - 34943881-34945233,34945321-34945524 31 1.6
04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648 30 2.1
01_05_0233 - 19641309-19641871,19650741-19650892,19651193-19651308 30 2.8
08_02_0448 + 17239987-17240489,17240633-17241042,17241183-172414... 29 3.7
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 29 3.7
06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652 29 3.7
03_06_0518 - 34474776-34474865,34475168-34475437,34475536-344758... 29 3.7
05_04_0380 + 20792090-20792662 29 6.5
09_02_0302 - 7086017-7086124,7086125-7086796,7087511-7088070,708... 28 8.5
09_02_0027 + 3105963-3106276,3106298-3107027,3107069-3107134,310... 28 8.5
09_01_0062 - 951413-951655 28 8.5
>07_03_0316 +
16684100-16684339,16684425-16685132,16685241-16685939,
16685992-16686053,16686096-16686368,16686622-16686873,
16686954-16687064,16687152-16687212,16687312-16687404,
16687482-16687667
Length = 894
Score = 33.9 bits (74), Expect = 0.17
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +2
Query: 269 RQSRRQSEYFEPTEDDSSPPPTASGNISVNDMVAMMSTWQRNQEETFEKLLHTVLNQSHR 448
RQS+RQ + P++DD +P T N S A +R+ + E H V + S +
Sbjct: 85 RQSKRQPKKKVPSKDDEAPTNTTGSNKSERSAKAKKRKGERSVNKKDEG-FHVVTHVSPK 143
Query: 449 SSPPPAQPALGNFAS 493
P + A F+S
Sbjct: 144 GEPLAPKTARAKFSS 158
>05_03_0132 -
8786518-8786827,8786897-8787164,8787296-8788005,
8788060-8788346,8788761-8789033
Length = 615
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/103 (19%), Positives = 37/103 (35%)
Frame = +2
Query: 398 EETFEKLLHTVLNQSHRSSPPPAQPALGNFASCKARYSGAPDESLDGFIDAVEAYKECAN 577
E+ E L + + H+++ A F C + L F++ Y
Sbjct: 57 EQAGEVALSLIESLKHKATSVVAATTKSTFMGCGSFSYEDAHAHLQQFLEICSTYTVKGV 116
Query: 578 VSETNALRGLSMLLTHEAATWWQGVKTTMNKWDHALTSLRGAF 706
+ + +R L +A W+ + T+N WD T+ F
Sbjct: 117 IPDAVRIRLFPFSLVGKAKQWFYVNRATINTWDRCSTAFLSKF 159
>04_04_1635 - 34943881-34945233,34945321-34945524
Length = 518
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +2
Query: 419 LHTVLNQSHRSSPPPAQPALGNFASCKARYSGAPDESLDGFIDA--VEAY--KECANVSE 586
+H ++ H S P PAL SC A + A E L+ A VEAY E +++
Sbjct: 262 IHQIIIDRHTSKPEAEYPALRFIRSCSASLAPAIMEKLEAAFGAPVVEAYAMTEASHLMT 321
Query: 587 TNAL 598
+N L
Sbjct: 322 SNPL 325
>04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648
Length = 857
Score = 30.3 bits (65), Expect = 2.1
Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 5/131 (3%)
Frame = +2
Query: 284 QSEYFEPTEDDSSPPPTASGNISVNDMVAMMSTWQRNQEETFEKLLHTVLNQSHRSS--P 457
Q E P + PPP N ++ + Q N TF LH + N +++ P
Sbjct: 297 QPEGSNPNPQGNPPPPPPP---DTNAILTQILAQQANMMNTF---LHHLQNPPQQNAPPP 350
Query: 458 PPAQPALGNFASCKA---RYSGAPDESLDGFIDAVEAYKECANVSETNALRGLSMLLTHE 628
PP L F + S P ++LD ++ AV + S+ + + L
Sbjct: 351 PPQHSKLAEFLRIRPPTFSSSNNPVDALD-WLHAVGKKLDTVQCSDEEKVIFAAHQLQGP 409
Query: 629 AATWWQGVKTT 661
A+ WW + T
Sbjct: 410 ASLWWDHFQAT 420
>01_05_0233 - 19641309-19641871,19650741-19650892,19651193-19651308
Length = 276
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 500 ARYSGAPDESLDGFIDAVEAYKECANVS-ETNALRGLSMLLTHEAATWWQGVKTTMNKWD 676
A +S + +E + AV Y + VS + LR L +A W+ + T+N WD
Sbjct: 74 APWSKSGEEKIPSATGAVPGYLQHLRVSPDAVRLRLFPFSLLGKAKQWFYANRATVNTWD 133
Query: 677 HALTSLRGAF 706
T+ F
Sbjct: 134 KCSTAFLSKF 143
>08_02_0448 +
17239987-17240489,17240633-17241042,17241183-17241406,
17241590-17242018,17244726-17244809
Length = 549
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +2
Query: 530 LDGFIDAVEAYKECANVSETNALRGLSMLLTHEAATWWQGVKTTMNKWDHALTSLRGAF 706
L F++ Y S+ LR S L +A W+ + T+N WD T+ F
Sbjct: 33 LQQFLEIYSTYTVKGVSSDAVRLRLFSFSLLGKAKQWFYANRMTVNTWDRCSTAFLSKF 91
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 452 SPPPAQPALGNFASCKARYSGAPDES 529
+PPP QPA G +A Y GAP ++
Sbjct: 58 APPPPQPAYGQPPPAQAGYYGAPPQA 83
>06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652
Length = 717
Score = 29.5 bits (63), Expect = 3.7
Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 7/120 (5%)
Frame = +2
Query: 323 PPPTASGNISVNDMVAMMSTWQRNQEETFEKLLHTVLNQSHRSSPPPAQP----ALGNFA 490
PPP N ++ + Q N F LH + N ++PPP P L F
Sbjct: 204 PPPPPPPPPDTNSILTQILAQQANMMAAF---LHHIQNPPQHNAPPPPPPPQHSKLAEFL 260
Query: 491 S-CKARYSGA--PDESLDGFIDAVEAYKECANVSETNALRGLSMLLTHEAATWWQGVKTT 661
C +S + P ++LD ++ V + ++ + + L A+ WW + T
Sbjct: 261 RICPPTFSSSNNPVDALD-WLHVVGKKLDTVQCNDEEKVIFAAHQLQGPASLWWDHFQAT 319
>03_06_0518 -
34474776-34474865,34475168-34475437,34475536-34475831,
34475924-34476013,34476172-34476337,34476399-34476679,
34476881-34477217
Length = 509
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 455 PPPAQPALGNFASCKARYSGAPDESLDGFIDAVEAYKECANVSETNALR 601
PPP + G + A +G P ES + + E +K +N S+ N ++
Sbjct: 120 PPPCENQNGEMTNLSAAGTGYPQESTE--LTVAEIFKATSNFSDKNIIK 166
>05_04_0380 + 20792090-20792662
Length = 190
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 419 LHTVLNQSHRSSPPPAQPALGNFASCKARYS 511
+H N + SS PP A GN A C+AR S
Sbjct: 1 MHGYSNLACSSSSPPPVAAAGNGAGCRARRS 31
>09_02_0302 -
7086017-7086124,7086125-7086796,7087511-7088070,
7088754-7089131,7089357-7089821,7090022-7090127,
7090219-7090294,7090407-7090648,7090824-7090904,
7091013-7091205,7091336-7091558,7091611-7091646,
7091694-7091790
Length = 1078
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 623 HEAATWWQGVKTTMNKWDHALTSLRGAFGDSRPPHRIYKELFANPQKASEKTELFISK 796
H A + + + T+ W+H+L +R G S P H + + TEL + K
Sbjct: 625 HAAVLFSEELSRTLVNWNHSLIKIRDESG-STPLHYLADGKYTTEPSCISVTELLLKK 681
>09_02_0027 +
3105963-3106276,3106298-3107027,3107069-3107134,
3107192-3107324,3108985-3109088
Length = 448
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/67 (25%), Positives = 27/67 (40%)
Frame = +2
Query: 506 YSGAPDESLDGFIDAVEAYKECANVSETNALRGLSMLLTHEAATWWQGVKTTMNKWDHAL 685
+ G P+E + + Y S+T LR L +A W+ + T+N WD
Sbjct: 92 FCGMPNEDANAHL---HTYTMKGVSSDTVRLRLFPFSLLGKAKQWFYANRATINTWDRCS 148
Query: 686 TSLRGAF 706
T+ F
Sbjct: 149 TTFLSKF 155
>09_01_0062 - 951413-951655
Length = 80
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 262 HTSSVSSTIRVFRTDRGRFFPAADCIGKHFRQRHGCHDVYVATQP 396
H + +T V +D RF P + C H R R H ++ +QP
Sbjct: 33 HLLTFGTTAPVVLSDSQRFIPDSGCTSTHLRSRQPSH-LWRRSQP 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,807,721
Number of Sequences: 37544
Number of extensions: 496210
Number of successful extensions: 1587
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1587
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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