Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_F08
(875 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0) 44 2e-04
SB_10714| Best HMM Match : Retrotrans_gag (HMM E-Value=5.4e-09) 44 2e-04
SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06) 41 0.001
SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.002
SB_9653| Best HMM Match : Retrotrans_gag (HMM E-Value=0.05) 39 0.006
SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.014
SB_23091| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.70
SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025) 31 1.2
SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20) 29 3.7
SB_53707| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2639
Score = 43.6 bits (98), Expect = 2e-04
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
Frame = +2
Query: 506 YSGAPDESLDGFIDAVEAYKECANVSETNALRGLSMLLTHEAATWWQG-VKTTMNKWDHA 682
+SG E ++ FI + E + LR L + LT A+ W+ + +N WD A
Sbjct: 2508 FSGDGIEDVNDFITRFQRMTEFYRWDDDRKLRALPLYLTGNASVWFNSHPRAALNTWDAA 2567
Query: 683 LTSLRGAFGDSRPPHRIYKELFANPQKASEKTELFISKTRALLSR--LPKDD 832
LT L+ F + ++L Q E + + R L R LPK +
Sbjct: 2568 LTQLKNHFDSGASQWLLRQQLDQRVQGKFEPLAQYTADIRRLCQRLKLPKSE 2619
>SB_10714| Best HMM Match : Retrotrans_gag (HMM E-Value=5.4e-09)
Length = 132
Score = 43.6 bits (98), Expect = 2e-04
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
Frame = +2
Query: 506 YSGAPDESLDGFIDAVEAYKECANVSETNALRGLSMLLTHEAATWWQG-VKTTMNKWDHA 682
+SG E ++ FI + E + LR L + LT A+ W+ + +N WD A
Sbjct: 6 FSGDGIEDVNDFITRFQQMTEFYRWDDERKLRALPLYLTGNASVWFNSHPRAALNTWDAA 65
Query: 683 LTSLRGAFGDSRPPHRIYKELFANPQKASEKTELFISKTRALLSR--LPKDD 832
LT L+ F + ++L Q E + + R L R LPK +
Sbjct: 66 LTQLKNHFDSGASQWLLRQQLDQRVQGKFEPLAQYTADIRRLCQRLKLPKSE 117
>SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)
Length = 882
Score = 41.1 bits (92), Expect = 0.001
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Frame = +2
Query: 506 YSGAPDESLDGFIDAVEAYKECANVSETNALRGLSMLLTHEAATWWQG-VKTTMNKWDHA 682
+SG E ++ FI + E + LR L + LT A+ + + +N WD A
Sbjct: 85 FSGDGIEDVNDFITRFQRMTEFYRWDDERKLRALPLYLTGNASVRFNSHPRAALNTWDAA 144
Query: 683 LTSLRGAFGDSRPPHRIYKELFANPQKASEKTELFISKTRALLSR--LPKDD 832
LT L+ F + ++L Q+ E +I+ R L R LPK +
Sbjct: 145 LTQLKNHFDSGASQWLLRQQLDQRVQEKFEPLAQYIADIRRLCQRLKLPKSE 196
>SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 772
Score = 40.7 bits (91), Expect = 0.002
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 1/106 (0%)
Frame = +2
Query: 506 YSGAPDESLDGFIDAVEAYKECANVSETNALRGLSMLLTHEAATWWQG-VKTTMNKWDHA 682
+SG E ++ FI + E + LR L + LT A+ W+ + N WD A
Sbjct: 171 FSGDGIEDVNDFITRFQRMTEFYRWDDERKLRALPLYLTGNASVWFNSHPRAAFNTWDAA 230
Query: 683 LTSLRGAFGDSRPPHRIYKELFANPQKASEKTELFISKTRALLSRL 820
LT L+ F + +L Q E + + R L RL
Sbjct: 231 LTQLKNHFDSGTSQWLLRLQLDQRIQGKFEPLAQYTADIRRLCQRL 276
>SB_9653| Best HMM Match : Retrotrans_gag (HMM E-Value=0.05)
Length = 626
Score = 38.7 bits (86), Expect = 0.006
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
Frame = +2
Query: 506 YSGAPDESLDGFIDAVEAYKECANVSETNALRGLSMLLTHEAATWWQG-VKTTMNKWDHA 682
+SG E ++ FI + E + LR L + T A+ W+ + +N WD A
Sbjct: 105 FSGDGIEDVNDFITLFQRMTEFYRWDDEIKLRALPLYHTGNASVWFNSHPRAALNTWDAA 164
Query: 683 LTSLRGAFGDSRPPHRIYKELFANPQKASEKTELFISKTRALLSRLPK 826
LT L+ F + ++L Q E + + R L +++ K
Sbjct: 165 LTQLKNHFDSGTSQWLLRQQLDQRVQGKFEPLAQYTADIRCLSAQIAK 212
>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1958
Score = 37.5 bits (83), Expect = 0.014
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
Frame = +2
Query: 524 ESLDGFIDAVEAYKECANVSETNALRGLSMLLTHEAATWWQGVK-TTMNKWDHALTSLRG 700
E ++ F + E + LR L + LT A+ W+ G +N WD ALT LR
Sbjct: 1206 EDVNDFNIRFQRMTEFYRWDDERKLRALPLYLTGNASVWFNGHPGAALNTWDAALTQLRN 1265
Query: 701 AFGDSRPPHRIYKELFANPQKASEKTELFISKTRALLSR--LPKDD 832
F + ++L + E + + R L R LPK +
Sbjct: 1266 HFDSGARQWLLRQQLDQRVKGKFEPLAQYTADIRRLCQRLKLPKSE 1311
>SB_23091| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 31.9 bits (69), Expect = 0.70
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = +2
Query: 608 SMLLTHEAATWWQG-VKTTMNKWDHALTSLRGAFGDSRPPHRIYKELFANPQKASEKTEL 784
++ L A+ W+ + +N WD ALT L+ F + ++L Q+ E
Sbjct: 15 ALYLAGNASVWFNSHPRAALNTWDAALTQLKNHFDSEASQWLLRQQLDQRVQEKFEPLAQ 74
Query: 785 FISKTRALLSR--LPKDD 832
+ + R L R LPK +
Sbjct: 75 YTADIRRLCQRLKLPKSE 92
>SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025)
Length = 1480
Score = 31.1 bits (67), Expect = 1.2
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -1
Query: 755 GWRTAPCIYDVEVGY-HQTH 699
GWR PCI +V++GY H+ H
Sbjct: 830 GWRNRPCILEVDLGYPHRLH 849
>SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)
Length = 1468
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 425 TVLNQSHRSSPPPAQPALGNFASCKARYSGAPDESLDGFI 544
TV +S ++ PP AQP G F+S R+ E++ G +
Sbjct: 595 TVTIESCKTHPPIAQPKAGVFSSSMLRHKATLRENITGML 634
>SB_53707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 308 EDDSSPPPTASGNISVNDMVAMMSTWQRNQEE--TFEKLLHTVLNQSHRSS 454
++D++ PP S +V + W R+Q+E +K++H V +S
Sbjct: 226 QEDATTPPLCQQQQSAPSLVVTPAGWSRHQKEEPVIQKVIHAVKTNEQTTS 276
>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2174
Score = 29.1 bits (62), Expect = 4.9
Identities = 22/70 (31%), Positives = 37/70 (52%)
Frame = +2
Query: 248 MTKPRTRRQSRRQSEYFEPTEDDSSPPPTASGNISVNDMVAMMSTWQRNQEETFEKLLHT 427
++ R R RR++E EP DSS P TAS +S + + +S+ Q++ +L+ T
Sbjct: 1181 LSSERPERSRRRRTET-EPR--DSSLPCTASTPVSHDQSPSTLSSIQQDSVVLATRLVST 1237
Query: 428 VLNQSHRSSP 457
+ S+ SP
Sbjct: 1238 SESTSNTESP 1247
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,821,711
Number of Sequences: 59808
Number of extensions: 587224
Number of successful extensions: 1696
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1695
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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