Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_F08
(875 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 25 0.92
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 24 1.6
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 24 2.1
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 23 2.8
M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee homeobox-... 23 3.7
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 22 6.5
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 22 6.5
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 22 6.5
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 22 6.5
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 22 6.5
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 22 6.5
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 22 6.5
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 25.0 bits (52), Expect = 0.92
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +2
Query: 242 YKMTKPRTRRQSRRQSEYF---EPTEDDSSPPPTA--SGNISVNDMVAMMSTWQRNQEET 406
Y+ + R++ +SR ++E EP S T + N + N+ + + N
Sbjct: 289 YRKYRERSKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNN 348
Query: 407 FEKLLHTVLNQSHRSSPPPAQPALGNF 487
++KL + ++N P P GNF
Sbjct: 349 YKKLYYNIINIEQIPVPVPVPIYCGNF 375
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 24.2 bits (50), Expect = 1.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 447 GHRRRPLNLHLETSPRARLA 506
GHR+R +HL T +RLA
Sbjct: 192 GHRQRHSTIHLSTGNYSRLA 211
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 23.8 bits (49), Expect = 2.1
Identities = 11/53 (20%), Positives = 25/53 (47%)
Frame = -2
Query: 313 VLCRFEILGLSTRLTTCARLCHFVR*SLLTVRFTKSSHFVYSKATSWASIFNV 155
++C+ GLS + + + R + VR+T + K TS + ++++
Sbjct: 772 LVCKIADFGLSREIESATEGAYTTRGGKIPVRWTAPEAIAFRKFTSASDVWSM 824
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 23.4 bits (48), Expect = 2.8
Identities = 17/83 (20%), Positives = 31/83 (37%)
Frame = +2
Query: 239 SYKMTKPRTRRQSRRQSEYFEPTEDDSSPPPTASGNISVNDMVAMMSTWQRNQEETFEKL 418
SYK + + + + + TE + S P ++S N + + + N +KL
Sbjct: 49 SYKNEREYRKYRETSKERSRDRTERERSREPKIISSLSNNYNYSNYNNYNNNYNNYNKKL 108
Query: 419 LHTVLNQSHRSSPPPAQPALGNF 487
+ + P P GNF
Sbjct: 109 YYNINYIEQIPVPVPVPVYCGNF 131
>M29494-1|AAA27729.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H15. ).
Length = 74
Score = 23.0 bits (47), Expect = 3.7
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 337 CSRRRGRIVLCRFEILGL 284
C RRRGR RF+ L L
Sbjct: 6 CPRRRGRQTYTRFQTLEL 23
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 22.2 bits (45), Expect = 6.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 447 GHRRRPLNLHLETSPRARLA 506
GHR+R + + L T +RLA
Sbjct: 192 GHRQRAMEISLTTGNYSRLA 211
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.2 bits (45), Expect = 6.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 128 NKTSNNRSRGLMIMINFKTNTLNQSYYK 45
++T RSR I+ + NT++ + YK
Sbjct: 68 DRTERERSREPKIISSLSNNTIHNNNYK 95
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.2 bits (45), Expect = 6.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 128 NKTSNNRSRGLMIMINFKTNTLNQSYYK 45
++T RSR I+ + NT++ + YK
Sbjct: 69 DRTERERSREPKIISSLSNNTIHNNNYK 96
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.2 bits (45), Expect = 6.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 128 NKTSNNRSRGLMIMINFKTNTLNQSYYK 45
++T RSR I+ + NT++ + YK
Sbjct: 69 DRTERERSREPKIISSLSNNTIHNNNYK 96
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.2 bits (45), Expect = 6.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 128 NKTSNNRSRGLMIMINFKTNTLNQSYYK 45
++T RSR I+ + NT++ + YK
Sbjct: 69 DRTERERSREPKIISSLSNNTIHNNNYK 96
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.2 bits (45), Expect = 6.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 128 NKTSNNRSRGLMIMINFKTNTLNQSYYK 45
++T RSR I+ + NT++ + YK
Sbjct: 69 DRTERERSREPKIISSLSNNTIHNNNYK 96
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 22.2 bits (45), Expect = 6.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 447 GHRRRPLNLHLETSPRARLA 506
GHR+R + + L T +RLA
Sbjct: 131 GHRQRAMEISLTTGNYSRLA 150
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,522
Number of Sequences: 438
Number of extensions: 5430
Number of successful extensions: 35
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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